Literature DB >> 30532624

A DNA barcode-assisted annotated checklist of the spider (Arachnida, Araneae) communities associated to white oak woodlands in Spanish National Parks.

Luís C Crespo1,2, Marc Domènech1, Alba Enguídanos1, Jagoba Malumbres-Olarte1,2,3, Pedro Cardoso2, Jordi Moya-Laraño4, Cristina Frías-López5, Nuria Macías-Hernández2,6, Eva De Mas4, Paola Mazzuca1, Elisa Mora1, Vera Opatova1,7, Enric Planas1, Carles Ribera1, Marcos Roca-Cusachs8, Dolores Ruiz4, Pedro Sousa9, Vanina Tonzo1, Miquel A Arnedo1.   

Abstract

BACKGROUND: A large scale semi-quantitative biodiversity assessment was conducted in white oak woodlands in areas included in the Spanish Network of National Parks, as part of a project aimed at revealing biogeographic patterns and identify biodiversity drivers. The semi-quantitative COBRA sampling protocol was conducted in sixteen 1-ha plots across six national parks using a nested design. All adult specimens were identified to species level based on morphology. Uncertain delimitations and identifications due to either limited information of diagnostic characters or conflicting taxonomy were further investigated using DNA barcode information. NEW INFORMATION: We identified 376 species belonging to 190 genera in 39 families, from the 8,521 adults found amongst the 20,539 collected specimens. Faunistic results include the discovery of 7 new species to the Iberian Peninsula, 3 new species to Spain and 11 putative new species to science. As largely expected by environmental features, the southern parks showed a higher proportion of Iberian and Mediterranean species than the northern parks, where the Palearctic elements were largely dominant. The analysis of approximately 3,200 DNA barcodes generated in the present study, corroborated and provided finer resolution to the morphologically based delimitation and identification of specimens in some taxonomically challenging families. Specifically, molecular data confirmed putative new species with diagnosable morphology, identified overlooked lineages that may constitute new species, confirmed assignment of specimens of unknown sexes to species and identified cases of misidentifications and phenotypic polymorphisms.

Entities:  

Keywords:  Dictynidae ; Gnaphosidae ; Linyphiidae ; Philodromidae ; COBRA protocol; DNA barcoding; Iberian Peninsula; Mediterranean region; faunistics

Year:  2018        PMID: 30532624      PMCID: PMC6284012          DOI: 10.3897/BDJ.6.e29443

Source DB:  PubMed          Journal:  Biodivers Data J        ISSN: 1314-2828


  26 in total

1.  Biological identifications through DNA barcodes.

Authors:  Paul D N Hebert; Alina Cywinska; Shelley L Ball; Jeremy R deWaard
Journal:  Proc Biol Sci       Date:  2003-02-07       Impact factor: 5.349

2.  MEGA6: Molecular Evolutionary Genetics Analysis version 6.0.

Authors:  Koichiro Tamura; Glen Stecher; Daniel Peterson; Alan Filipski; Sudhir Kumar
Journal:  Mol Biol Evol       Date:  2013-10-16       Impact factor: 16.240

3.  Cephalic modifications in dimorphic dwarf spiders of the genus Oedothorax (Erigoninae, Linyphiidae, Araneae) and their evolutionary implications.

Authors:  Peter Michalik; Gabriele Uhl
Journal:  J Morphol       Date:  2011-04-06       Impact factor: 1.804

4.  DNA barcoding gap: reliable species identification over morphological and geographical scales.

Authors:  Klemen Čandek; Matjaž Kuntner
Journal:  Mol Ecol Resour       Date:  2014-08-06       Impact factor: 7.090

5.  Estimating terrestrial biodiversity through extrapolation.

Authors:  R K Colwell; J A Coddington
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  1994-07-29       Impact factor: 6.237

6.  Ten species in one: DNA barcoding reveals cryptic species in the neotropical skipper butterfly Astraptes fulgerator.

Authors:  Paul D N Hebert; Erin H Penton; John M Burns; Daniel H Janzen; Winnie Hallwachs
Journal:  Proc Natl Acad Sci U S A       Date:  2004-10-01       Impact factor: 11.205

7.  DNA primers for amplification of mitochondrial cytochrome c oxidase subunit I from diverse metazoan invertebrates.

Authors:  O Folmer; M Black; W Hoeh; R Lutz; R Vrijenhoek
Journal:  Mol Mar Biol Biotechnol       Date:  1994-10

8.  Geneious Basic: an integrated and extendable desktop software platform for the organization and analysis of sequence data.

Authors:  Matthew Kearse; Richard Moir; Amy Wilson; Steven Stones-Havas; Matthew Cheung; Shane Sturrock; Simon Buxton; Alex Cooper; Sidney Markowitz; Chris Duran; Tobias Thierer; Bruce Ashton; Peter Meintjes; Alexei Drummond
Journal:  Bioinformatics       Date:  2012-04-27       Impact factor: 6.937

9.  ModelFinder: fast model selection for accurate phylogenetic estimates.

Authors:  Subha Kalyaanamoorthy; Bui Quang Minh; Thomas K F Wong; Arndt von Haeseler; Lars S Jermiin
Journal:  Nat Methods       Date:  2017-05-08       Impact factor: 28.547

10.  Towards a DNA Barcode Reference Database for Spiders and Harvestmen of Germany.

Authors:  Jonas J Astrin; Hubert Höfer; Jörg Spelda; Joachim Holstein; Steffen Bayer; Lars Hendrich; Bernhard A Huber; Karl-Hinrich Kielhorn; Hans-Joachim Krammer; Martin Lemke; Juan Carlos Monje; Jérôme Morinière; Björn Rulik; Malte Petersen; Hannah Janssen; Christoph Muster
Journal:  PLoS One       Date:  2016-09-28       Impact factor: 3.240

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  5 in total

1.  Standardised inventories of spiders (Arachnida, Araneae) of Macaronesia II: The native forests and dry habitats of Madeira archipelago (Madeira and Porto Santo islands).

Authors:  Jagoba Malumbres-Olarte; Mário Boieiro; Pedro Cardoso; Rui Carvalho; Luís Carlos Fonseca Crespo; Rosalina Gabriel; Nuria Macías Hernández; Octávio S Paulo; Fernando Pereira; Carla Rego; Alejandra Ros-Prieto; Isamberto Silva; Ana Vieira; François Rigal; Paulo A V Borges
Journal:  Biodivers Data J       Date:  2020-01-14

Review 2.  High-throughput sequencing for community analysis: the promise of DNA barcoding to uncover diversity, relatedness, abundances and interactions in spider communities.

Authors:  Susan R Kennedy; Stefan Prost; Isaac Overcast; Andrew J Rominger; Rosemary G Gillespie; Henrik Krehenwinkel
Journal:  Dev Genes Evol       Date:  2020-02-10       Impact factor: 0.900

3.  A database of functional traits for spiders from native forests of the Iberian Peninsula and Macaronesia.

Authors:  Nuria Macías-Hernández; Cândida Ramos; Marc Domènech; Sara Febles; Irene Santos; Miquel A Arnedo; Paulo A V Borges; Brent C Emerson; Pedro Cardoso
Journal:  Biodivers Data J       Date:  2020-04-30

4.  Mining data from legacy taxonomic literature and application for sampling spiders of the Teutamus group (Araneae; Liocranidae) in Southeast Asia.

Authors:  F Andres Rivera-Quiroz; Booppa Petcharad; Jeremy A Miller
Journal:  Sci Rep       Date:  2020-09-25       Impact factor: 4.379

5.  Incongruent molecular and morphological variation in the crab spider Synemaglobosum (Araneae, Thomisidae) in Europe.

Authors:  Karin Urfer; Tamara Spasojevic; Seraina Klopfstein; Hannes Baur; Liana Lasut; Christian Kropf
Journal:  Zookeys       Date:  2021-12-17       Impact factor: 1.546

  5 in total

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