Literature DB >> 26151821

Genome-wide association study of colorectal cancer identifies six new susceptibility loci.

Fredrick R Schumacher1, Stephanie L Schmit1,2, Shuo Jiao3, Christopher K Edlund1, Hansong Wang4, Ben Zhang5, Li Hsu3, Shu-Chen Huang1, Christopher P Fischer6, John F Harju6, Gregory E Idos1, Flavio Lejbkowicz7,8, Frank J Manion6, Kevin McDonnell1, Caroline E McNeil1, Marilena Melas1, Hedy S Rennert7,8, Wei Shi9, Duncan C Thomas1, David J Van Den Berg1, Carolyn M Hutter10, Aaron K Aragaki3, Katja Butterbach11, Bette J Caan12, Christopher S Carlson3, Stephen J Chanock13, Keith R Curtis3, Charles S Fuchs14,15, Manish Gala16, Edward L Giovannucci17,18, Stephanie M Gogarten19, Richard B Hayes20, Brian Henderson1, David J Hunter21, Rebecca D Jackson22, Laurence N Kolonel23, Charles Kooperberg3, Sébastien Küry24, Andrea LaCroix3, Cathy C Laurie19, Cecelia A Laurie19, Mathieu Lemire25, David Levine19, Jing Ma26, Karen W Makar3, Conghui Qu3, Darin Taverna27, Cornelia M Ulrich3,28,29, Kana Wu30, Suminori Kono31, Dee W West32, Sonja I Berndt13, Stéphane Bezieau33, Hermann Brenner11, Peter T Campbell34, Andrew T Chan16,17, Jenny Chang-Claude35, Gerhard A Coetzee1, David V Conti1,36, David Duggan37, Jane C Figueiredo1, Barbara K Fortini1, Steven J Gallinger38, W James Gauderman1, Graham Giles39, Roger Green40, Robert Haile41, Tabitha A Harrison3, Michael Hoffmeister11, John L Hopper42, Thomas J Hudson43, Eric Jacobs34, Motoki Iwasaki44, Sun Ha Jee45, Mark Jenkins46, Wei-Hua Jia47, Amit Joshi48, Li Li49, Noralene M Lindor50, Keitaro Matsuo31, Victor Moreno51, Bhramar Mukherjee52, Polly A Newcomb53, John D Potter53, Leon Raskin1,54,55, Gad Rennert1,7,8,56, Stephanie Rosse3, Gianluca Severi39,57, Robert E Schoen58, Daniela Seminara59, Xiao-Ou Shu55,60, Martha L Slattery61, Shoichiro Tsugane44, Emily White3, Yong-Bing Xiang62, Brent W Zanke63,64, Wei Zheng54,55, Loic Le Marchand4, Graham Casey1, Stephen B Gruber1,2, Ulrike Peters3.   

Abstract

Genetic susceptibility to colorectal cancer is caused by rare pathogenic mutations and common genetic variants that contribute to familial risk. Here we report the results of a two-stage association study with 18,299 cases of colorectal cancer and 19,656 controls, with follow-up of the most statistically significant genetic loci in 4,725 cases and 9,969 controls from two Asian consortia. We describe six new susceptibility loci reaching a genome-wide threshold of P<5.0E-08. These findings provide additional insight into the underlying biological mechanisms of colorectal cancer and demonstrate the scientific value of large consortia-based genetic epidemiology studies.

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Year:  2015        PMID: 26151821      PMCID: PMC4967357          DOI: 10.1038/ncomms8138

Source DB:  PubMed          Journal:  Nat Commun        ISSN: 2041-1723            Impact factor:   14.919


  53 in total

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Journal:  Mol Cell Biol       Date:  2006-12-18       Impact factor: 4.272

2.  Genetic loss of SH2B3 in acute lymphoblastic leukemia.

Authors:  Arianne Perez-Garcia; Alberto Ambesi-Impiombato; Michael Hadler; Isaura Rigo; Charles A LeDuc; Kara Kelly; Chaim Jalas; Elisabeth Paietta; Janis Racevskis; Jacob M Rowe; Martin S Tallman; Maddalena Paganin; Giuseppe Basso; Wei Tong; Wendy K Chung; Adolfo A Ferrando
Journal:  Blood       Date:  2013-08-01       Impact factor: 22.113

3.  Common genetic variants at the CRAC1 (HMPS) locus on chromosome 15q13.3 influence colorectal cancer risk.

Authors:  Emma Jaeger; Emily Webb; Kimberley Howarth; Luis Carvajal-Carmona; Andrew Rowan; Peter Broderick; Axel Walther; Sarah Spain; Alan Pittman; Zoe Kemp; Kate Sullivan; Karl Heinimann; Steven Lubbe; Enric Domingo; Ella Barclay; Lynn Martin; Maggie Gorman; Ian Chandler; Jayaram Vijayakrishnan; Wendy Wood; Elli Papaemmanuil; Steven Penegar; Mobshra Qureshi; Susan Farrington; Albert Tenesa; Jean-Baptiste Cazier; David Kerr; Richard Gray; Julian Peto; Malcolm Dunlop; Harry Campbell; Huw Thomas; Richard Houlston; Ian Tomlinson
Journal:  Nat Genet       Date:  2007-12-16       Impact factor: 38.330

4.  A genome-wide association study identifies pancreatic cancer susceptibility loci on chromosomes 13q22.1, 1q32.1 and 5p15.33.

Authors:  Gloria M Petersen; Laufey Amundadottir; Charles S Fuchs; Peter Kraft; Rachael Z Stolzenberg-Solomon; Kevin B Jacobs; Alan A Arslan; H Bas Bueno-de-Mesquita; Steven Gallinger; Myron Gross; Kathy Helzlsouer; Elizabeth A Holly; Eric J Jacobs; Alison P Klein; Andrea LaCroix; Donghui Li; Margaret T Mandelson; Sara H Olson; Harvey A Risch; Wei Zheng; Demetrius Albanes; William R Bamlet; Christine D Berg; Marie-Christine Boutron-Ruault; Julie E Buring; Paige M Bracci; Federico Canzian; Sandra Clipp; Michelle Cotterchio; Mariza de Andrade; Eric J Duell; J Michael Gaziano; Edward L Giovannucci; Michael Goggins; Göran Hallmans; Susan E Hankinson; Manal Hassan; Barbara Howard; David J Hunter; Amy Hutchinson; Mazda Jenab; Rudolf Kaaks; Charles Kooperberg; Vittorio Krogh; Robert C Kurtz; Shannon M Lynch; Robert R McWilliams; Julie B Mendelsohn; Dominique S Michaud; Hemang Parikh; Alpa V Patel; Petra H M Peeters; Aleksandar Rajkovic; Elio Riboli; Laudina Rodriguez; Daniela Seminara; Xiao-Ou Shu; Gilles Thomas; Anne Tjønneland; Geoffrey S Tobias; Dimitrios Trichopoulos; Stephen K Van Den Eeden; Jarmo Virtamo; Jean Wactawski-Wende; Zhaoming Wang; Brian M Wolpin; Herbert Yu; Kai Yu; Anne Zeleniuch-Jacquotte; Joseph F Fraumeni; Robert N Hoover; Patricia Hartge; Stephen J Chanock
Journal:  Nat Genet       Date:  2010-01-24       Impact factor: 38.330

5.  Association between the SERPING1 gene and age-related macular degeneration and polypoidal choroidal vasculopathy in Japanese.

Authors:  Isao Nakata; Kenji Yamashiro; Ryo Yamada; Norimoto Gotoh; Hideo Nakanishi; Hisako Hayashi; Akitaka Tsujikawa; Atsushi Otani; Masaaki Saito; Tomohiro Iida; Akio Oishi; Keitaro Matsuo; Kazuo Tajima; Fumihiko Matsuda; Nagahisa Yoshimura
Journal:  PLoS One       Date:  2011-04-19       Impact factor: 3.240

6.  Multiple common susceptibility variants near BMP pathway loci GREM1, BMP4, and BMP2 explain part of the missing heritability of colorectal cancer.

Authors:  Ian P M Tomlinson; Luis G Carvajal-Carmona; Sara E Dobbins; Albert Tenesa; Angela M Jones; Kimberley Howarth; Claire Palles; Peter Broderick; Emma E M Jaeger; Susan Farrington; Annabelle Lewis; James G D Prendergast; Alan M Pittman; Evropi Theodoratou; Bianca Olver; Marion Walker; Steven Penegar; Ella Barclay; Nicola Whiffin; Lynn Martin; Stephane Ballereau; Amy Lloyd; Maggie Gorman; Steven Lubbe; Bryan Howie; Jonathan Marchini; Clara Ruiz-Ponte; Ceres Fernandez-Rozadilla; Antoni Castells; Angel Carracedo; Sergi Castellvi-Bel; David Duggan; David Conti; Jean-Baptiste Cazier; Harry Campbell; Oliver Sieber; Lara Lipton; Peter Gibbs; Nicholas G Martin; Grant W Montgomery; Joanne Young; Paul N Baird; Steven Gallinger; Polly Newcomb; John Hopper; Mark A Jenkins; Lauri A Aaltonen; David J Kerr; Jeremy Cheadle; Paul Pharoah; Graham Casey; Richard S Houlston; Malcolm G Dunlop
Journal:  PLoS Genet       Date:  2011-06-02       Impact factor: 5.917

7.  Genotype imputation with thousands of genomes.

Authors:  Bryan Howie; Jonathan Marchini; Matthew Stephens
Journal:  G3 (Bethesda)       Date:  2011-11-01       Impact factor: 3.154

8.  A novel colorectal cancer risk locus at 4q32.2 identified from an international genome-wide association study.

Authors:  Stephanie L Schmit; Fredrick R Schumacher; Christopher K Edlund; David V Conti; Leon Raskin; Flavio Lejbkowicz; Mila Pinchev; Hedy S Rennert; Mark A Jenkins; John L Hopper; Daniel D Buchanan; Noralane M Lindor; Loic Le Marchand; Steven Gallinger; Robert W Haile; Polly A Newcomb; Shu-Chen Huang; Gad Rennert; Graham Casey; Stephen B Gruber
Journal:  Carcinogenesis       Date:  2014-07-14       Impact factor: 4.741

9.  An integrated map of genetic variation from 1,092 human genomes.

Authors:  Goncalo R Abecasis; Adam Auton; Lisa D Brooks; Mark A DePristo; Richard M Durbin; Robert E Handsaker; Hyun Min Kang; Gabor T Marth; Gil A McVean
Journal:  Nature       Date:  2012-11-01       Impact factor: 49.962

10.  Trans-ethnic genome-wide association study of colorectal cancer identifies a new susceptibility locus in VTI1A.

Authors:  Hansong Wang; Terrilea Burnett; Suminori Kono; Christopher A Haiman; Motoki Iwasaki; Lynne R Wilkens; Lenora W M Loo; David Van Den Berg; Laurence N Kolonel; Brian E Henderson; Temitope O Keku; Robert S Sandler; Lisa B Signorello; William J Blot; Polly A Newcomb; Mala Pande; Christopher I Amos; Dee W West; Stéphane Bézieau; Sonja I Berndt; Brent W Zanke; Li Hsu; Noralane M Lindor; Robert W Haile; John L Hopper; Mark A Jenkins; Steven Gallinger; Graham Casey; Stephanie L Stenzel; Fredrick R Schumacher; Ulrike Peters; Stephen B Gruber; Shoichiro Tsugane; Daniel O Stram; Loïc Le Marchand
Journal:  Nat Commun       Date:  2014-08-08       Impact factor: 14.919

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  80 in total

1.  UXT-AS1-induced alternative splicing of UXT is associated with tumor progression in colorectal cancer.

Authors:  Jun Yin; Wei Luo; Xiang Zeng; Lisi Zeng; Zhiyang Li; Xiaofang Deng; Xiaojun Tan; Weimin Hu
Journal:  Am J Cancer Res       Date:  2017-03-01       Impact factor: 6.166

2.  BRCA1-associated protein inhibits glioma cell proliferation and migration and glioma stem cell self-renewal via the TGF-β/PI3K/AKT/mTOR signalling pathway.

Authors:  Bo Wang; Chen Cao; Xi Liu; Xin He; Hao Zhuang; Dong Wang; Budong Chen
Journal:  Cell Oncol (Dordr)       Date:  2019-11-27       Impact factor: 6.730

3.  Impact of polymorphisms within genes involved in regulating DNA methylation in patients with metastatic colorectal cancer enrolled in three independent, randomised, open-label clinical trials: a meta-analysis from TRIBE, MAVERICC and FIRE-3.

Authors:  Alberto Puccini; Fotios Loupakis; Sebastian Stintzing; Shu Cao; Francesca Battaglin; Ryuma Togunaka; Madiha Naseem; Martin D Berger; Shivani Soni; Wu Zhang; Christoph Mancao; Bodour Salhia; Shannon M Mumenthaler; Daniel J Weisenberger; Gangning Liang; Chiara Cremolini; Volker Heinemann; Alfredo Falcone; Joshua Millstein; Heinz-Josef Lenz
Journal:  Eur J Cancer       Date:  2019-03-07       Impact factor: 9.162

Review 4.  The role of LNK/SH2B3 genetic alterations in myeloproliferative neoplasms and other hematological disorders.

Authors:  N Maslah; B Cassinat; E Verger; J-J Kiladjian; L Velazquez
Journal:  Leukemia       Date:  2017-05-09       Impact factor: 11.528

5.  Colorectal cancer susceptibility variants and risk of conventional adenomas and serrated polyps: results from three cohort studies.

Authors:  Dong Hang; Amit D Joshi; Xiaosheng He; Andrew T Chan; Manol Jovani; Manish K Gala; Shuji Ogino; Peter Kraft; Constance Turman; Ulrike Peters; Stephanie A Bien; Yi Lin; Zhibin Hu; Hongbing Shen; Kana Wu; Edward L Giovannucci; Mingyang Song
Journal:  Int J Epidemiol       Date:  2020-02-01       Impact factor: 7.196

6.  Identification of Susceptibility Loci and Genes for Colorectal Cancer Risk.

Authors:  Chenjie Zeng; Koichi Matsuda; Wei-Hua Jia; Jiang Chang; Sun-Seog Kweon; Yong-Bing Xiang; Aesun Shin; Sun Ha Jee; Dong-Hyun Kim; Ben Zhang; Qiuyin Cai; Xingyi Guo; Jirong Long; Nan Wang; Regina Courtney; Zhi-Zhong Pan; Chen Wu; Atsushi Takahashi; Min-Ho Shin; Keitaro Matsuo; Fumihiko Matsuda; Yu-Tang Gao; Jae Hwan Oh; Soriul Kim; Keum Ji Jung; Yoon-Ok Ahn; Zefang Ren; Hong-Lan Li; Jie Wu; Jiajun Shi; Wanqing Wen; Gong Yang; Bingshan Li; Bu-Tian Ji; Hermann Brenner; Robert E Schoen; Sébastien Küry; Stephen B Gruber; Fredrick R Schumacher; Stephanie L Stenzel; Graham Casey; John L Hopper; Mark A Jenkins; Hyeong-Rok Kim; Jin-Young Jeong; Ji Won Park; Kazuo Tajima; Sang-Hee Cho; Michiaki Kubo; Xiao-Ou Shu; Dongxin Lin; Yi-Xin Zeng; Wei Zheng
Journal:  Gastroenterology       Date:  2016-03-08       Impact factor: 22.682

7.  Large-Scale Genome-Wide Association Study of East Asians Identifies Loci Associated With Risk for Colorectal Cancer.

Authors:  Yingchang Lu; Sun-Seog Kweon; Chizu Tanikawa; Wei-Hua Jia; Yong-Bing Xiang; Qiuyin Cai; Chenjie Zeng; Stephanie L Schmit; Aesun Shin; Keitaro Matsuo; Sun Ha Jee; Dong-Hyun Kim; Jeongseon Kim; Wanqing Wen; Jiajun Shi; Xingyi Guo; Bingshan Li; Nan Wang; Ben Zhang; Xinxiang Li; Min-Ho Shin; Hong-Lan Li; Zefang Ren; Jae Hwan Oh; Isao Oze; Yoon-Ok Ahn; Keum Ji Jung; David V Conti; Fredrick R Schumacher; Gad Rennert; Mark A Jenkins; Peter T Campbell; Michael Hoffmeister; Graham Casey; Stephen B Gruber; Jing Gao; Yu-Tang Gao; Zhi-Zhong Pan; Yoichiro Kamatani; Yi-Xin Zeng; Xiao-Ou Shu; Jirong Long; Koichi Matsuda; Wei Zheng
Journal:  Gastroenterology       Date:  2018-12-06       Impact factor: 22.682

8.  Evaluation of genetic variants in association with colorectal cancer risk and survival in Asians.

Authors:  Nan Wang; Yingchang Lu; Nikhil K Khankari; Jirong Long; Hong-Lan Li; Jing Gao; Yu-Tang Gao; Yong-Bing Xiang; Xiao-Ou Shu; Wei Zheng
Journal:  Int J Cancer       Date:  2017-06-21       Impact factor: 7.396

9.  Genetic Predictors of Circulating 25-Hydroxyvitamin D and Prognosis after Colorectal Cancer.

Authors:  Sonja Neumeyer; Katja Butterbach; Barbara L Banbury; Sonja I Berndt; Peter T Campbell; Rowan T Chlebowski; Andrew T Chan; Edward L Giovannucci; Amit D Joshi; Shuji Ogino; Mingyang Song; Marjorie L McCullough; Haifa Maalmi; JoAnn E Manson; Lori C Sakoda; Robert E Schoen; Martha L Slattery; Emily White; Aung K Win; Jane C Figueiredo; John L Hopper; Finlay A Macrae; Ulrike Peters; Hermann Brenner; Michael Hoffmeister; Polly A Newcomb; Jenny Chang-Claude
Journal:  Cancer Epidemiol Biomarkers Prev       Date:  2020-03-18       Impact factor: 4.254

Review 10.  Genome-Wide Association Studies in Glioma.

Authors:  Ben Kinnersley; Richard S Houlston; Melissa L Bondy
Journal:  Cancer Epidemiol Biomarkers Prev       Date:  2018-01-30       Impact factor: 4.254

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