Literature DB >> 26151772

Immature large ribosomal subunits containing the 7S pre-rRNA can engage in translation in Saccharomyces cerevisiae.

Olga Rodríguez-Galán1, Juan J García-Gómez, Dieter Kressler, Jesús de la Cruz.   

Abstract

Evolution has provided eukaryotes with mechanisms that impede immature and/or aberrant ribosomes to engage in translation. These mechanisms basically either prevent the nucleo-cytoplasmic export of these particles or, once in the cytoplasm, the release of associated assembly factors, which interfere with the binding of translation initiation factors and/or the ribosomal subunit joining. We have previously shown that aberrant yeast 40S ribosomal subunits containing the 20S pre-rRNA can engage in translation. In this study, we describe that cells harbouring the dob1-1 allele, encoding a mutated version of the exosome-assisting RNA helicase Mtr4, accumulate otherwise nuclear pre-60S ribosomal particles containing the 7S pre-rRNA in the cytoplasm. Polysome fractionation analyses revealed that these particles are competent for translation and do not induce elongation stalls. This phenomenon is rather specific since most mutations in other exosome components or co-factors, impairing the 3' end processing of the mature 5.8S rRNA, accumulate 7S pre-rRNAs in the nucleus. In addition, we confirm that pre-60S ribosomal particles containing either 5.8S + 30 or 5.8S + 5 pre-rRNAs also engage in translation elongation. We propose that 7S pre-rRNA processing is not strictly required for pre-60S r-particle export and that, upon arrival in the cytoplasm, there is no specific mechanism to prevent translation by premature pre-60S r-particles containing 3' extended forms of mature 5.8S rRNA.

Entities:  

Keywords:  DAPI, 4,6-diamidino-2-phenylindole; FISH, fluorescence in situ hybridization; Mtr4/Dob1; NRD, Non-functional rRNA decay; RNA exosome; RNA helicase; Ribosome biogenesis; TRAMP complexes, Trf/Air/Mtr4 complexes; Translation; pre-rRNA processing; pre-rRNA, precursor rRNA; r-particles, ribosomal particles; r-proteins, ribosomal proteins; r-subunits, ribosomal subunits; yeast

Mesh:

Substances:

Year:  2015        PMID: 26151772      PMCID: PMC4615593          DOI: 10.1080/15476286.2015.1058477

Source DB:  PubMed          Journal:  RNA Biol        ISSN: 1547-6286            Impact factor:   4.652


  62 in total

1.  Degradation of ribosomal RNA precursors by the exosome.

Authors:  C Allmang; P Mitchell; E Petfalski; D Tollervey
Journal:  Nucleic Acids Res       Date:  2000-04-15       Impact factor: 16.971

2.  Function of the ski4p (Csl4p) and Ski7p proteins in 3'-to-5' degradation of mRNA.

Authors:  A van Hoof; R R Staples; R E Baker; R Parker
Journal:  Mol Cell Biol       Date:  2000-11       Impact factor: 4.272

3.  A panoramic view of yeast noncoding RNA processing.

Authors:  Wen Tao Peng; Mark D Robinson; Sanie Mnaimneh; Nevan J Krogan; Gerard Cagney; Quaid Morris; Armaity P Davierwala; Jörg Grigull; Xueqi Yang; Wen Zhang; Nicholas Mitsakakis; Owen W Ryan; Nira Datta; Vladimir Jojic; Chris Pal; Veronica Canadien; Dawn Richards; Bryan Beattie; Lani F Wu; Steven J Altschuler; Sam Roweis; Brendan J Frey; Andrew Emili; Jack F Greenblatt; Timothy R Hughes
Journal:  Cell       Date:  2003-06-27       Impact factor: 41.582

Review 4.  Ribosome assembly in eukaryotes.

Authors:  Micheline Fromont-Racine; Bruno Senger; Cosmin Saveanu; Franco Fasiolo
Journal:  Gene       Date:  2003-08-14       Impact factor: 3.688

5.  The carboxy-terminal extension of yeast ribosomal protein S14 is necessary for maturation of 43S preribosomes.

Authors:  Jelena Jakovljevic; Pamela Antúnez de Mayolo; Tiffany D Miles; Theresa Mai-Ly Nguyen; Isabelle Léger-Silvestre; Nicole Gas; John L Woolford
Journal:  Mol Cell       Date:  2004-05-07       Impact factor: 17.970

6.  Spb1p is a putative methyltransferase required for 60S ribosomal subunit biogenesis in Saccharomyces cerevisiae.

Authors:  D Kressler; M Rojo; P Linder; J Cruz
Journal:  Nucleic Acids Res       Date:  1999-12-01       Impact factor: 16.971

Review 7.  Functions of ribosomal proteins in assembly of eukaryotic ribosomes in vivo.

Authors:  Jesus de la Cruz; Katrin Karbstein; John L Woolford
Journal:  Annu Rev Biochem       Date:  2015-02-20       Impact factor: 23.643

8.  An aminoacylation-dependent nuclear tRNA export pathway in yeast.

Authors:  H Grosshans; E Hurt; G Simos
Journal:  Genes Dev       Date:  2000-04-01       Impact factor: 11.361

9.  Rrp47p is an exosome-associated protein required for the 3' processing of stable RNAs.

Authors:  Philip Mitchell; Elisabeth Petfalski; Rym Houalla; Alexandre Podtelejnikov; Matthias Mann; David Tollervey
Journal:  Mol Cell Biol       Date:  2003-10       Impact factor: 4.272

10.  Ngl2p is a Ccr4p-like RNA nuclease essential for the final step in 3'-end processing of 5.8S rRNA in Saccharomyces cerevisiae.

Authors:  Alex W Faber; Marie Van Dijk; Hendrik A Raué; Jan C Vos
Journal:  RNA       Date:  2002-09       Impact factor: 4.942

View more
  20 in total

1.  Nucleolar localization of the yeast RNA exosome subunit Rrp44 hints at early pre-rRNA processing as its main function.

Authors:  Ellen K Okuda; Fernando A Gonzales-Zubiate; Olivier Gadal; Carla C Oliveira
Journal:  J Biol Chem       Date:  2020-06-17       Impact factor: 5.157

2.  Role of the 40S beak ribosomal protein eS12 in ribosome biogenesis and function in Saccharomyces cerevisiae.

Authors:  Sara Martín-Villanueva; José Fernández-Fernández; Olga Rodríguez-Galán; Julia Fernández-Boraita; Eduardo Villalobo; Jesús de La Cruz
Journal:  RNA Biol       Date:  2020-06-07       Impact factor: 4.652

Review 3.  Ribosome assembly coming into focus.

Authors:  Sebastian Klinge; John L Woolford
Journal:  Nat Rev Mol Cell Biol       Date:  2019-02       Impact factor: 94.444

4.  Cooling-induced SUMOylation of EXOSC10 down-regulates ribosome biogenesis.

Authors:  John R P Knight; Amandine Bastide; Diego Peretti; Anne Roobol; Jo Roobol; Giovanna R Mallucci; C Mark Smales; Anne E Willis
Journal:  RNA       Date:  2016-02-08       Impact factor: 4.942

5.  An Mtr4/ZFC3H1 complex facilitates turnover of unstable nuclear RNAs to prevent their cytoplasmic transport and global translational repression.

Authors:  Koichi Ogami; Patricia Richard; Yaqiong Chen; Mainul Hoque; Wencheng Li; James J Moresco; John R Yates; Bin Tian; James L Manley
Journal:  Genes Dev       Date:  2017-07-21       Impact factor: 11.361

6.  Coupling of 5S RNP rotation with maturation of functional centers during large ribosomal subunit assembly.

Authors:  Jelena Micic; Yu Li; Shan Wu; Daniel Wilson; Beril Tutuncuoglu; Ning Gao; John L Woolford
Journal:  Nat Commun       Date:  2020-07-27       Impact factor: 14.919

7.  A Novel Model for the RNase MRP-Induced Switch between the Formation of Different Forms of 5.8S rRNA.

Authors:  Xiao Li; Janice M Zengel; Lasse Lindahl
Journal:  Int J Mol Sci       Date:  2021-06-22       Impact factor: 5.923

8.  Eukaryote-specific rRNA expansion segments function in ribosome biogenesis.

Authors:  Madhumitha Ramesh; John L Woolford
Journal:  RNA       Date:  2016-06-17       Impact factor: 4.942

9.  The Rio1p ATPase hinders premature entry into translation of late pre-40S pre-ribosomal particles.

Authors:  Kamila Belhabich-Baumas; Clément Joret; Beáta E Jády; Célia Plisson-Chastang; Ramtin Shayan; Christophe Klopp; Anthony K Henras; Yves Henry; Annie Mougin
Journal:  Nucleic Acids Res       Date:  2017-10-13       Impact factor: 16.971

10.  Two Nucleolar Proteins, GDP1 and OLI2, Function As Ribosome Biogenesis Factors and Are Preferentially Involved in Promotion of Leaf Cell Proliferation without Strongly Affecting Leaf Adaxial-Abaxial Patterning in Arabidopsis thaliana.

Authors:  Koji Kojima; Junya Tamura; Hiroto Chiba; Kanae Fukada; Hirokazu Tsukaya; Gorou Horiguchi
Journal:  Front Plant Sci       Date:  2018-01-09       Impact factor: 5.753

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.