Literature DB >> 26143255

DNA Methylation within Transcribed Regions.

Taiko K To1, Hidetoshi Saze1, Tetsuji Kakutani2.   

Abstract

DNA methylation within transcribed genes is commonly found in diverse animals and plants. Here, we provide an overview of recent advances and the remaining mystery regarding intragenic DNA methylation.
© 2015 American Society of Plant Biologists. All Rights Reserved.

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Year:  2015        PMID： 26143255      PMCID： PMC4528756          DOI： 10.1104/pp.15.00543

Source DB:  PubMed          Journal:  Plant Physiol        ISSN： 0032-0889            Impact factor:   8.340


  64 in total

Review 1.  Patterning chromatin: form and function for H2A.Z variant nucleosomes.

Authors:  Ryan M Raisner; Hiten D Madhani
Journal:  Curr Opin Genet Dev       Date:  2006-02-28       Impact factor: 5.578

Review 2.  Five repair pathways in one context: chromatin modification during DNA repair.

Authors:  Yeganeh Ataian; Jocelyn E Krebs
Journal:  Biochem Cell Biol       Date:  2006-08       Impact factor: 3.626

3.  Epigenetic silencing of transposable elements: a trade-off between reduced transposition and deleterious effects on neighboring gene expression.

Authors:  Jesse D Hollister; Brandon S Gaut
Journal:  Genome Res       Date:  2009-05-28       Impact factor: 9.043

4.  RNA polymerase I transcription factors in active yeast rRNA gene promoters enhance UV damage formation and inhibit repair.

Authors:  Andreas Meier; Fritz Thoma
Journal:  Mol Cell Biol       Date:  2005-03       Impact factor: 4.272

5.  Two strategies for gene regulation by promoter nucleosomes.

Authors:  Itay Tirosh; Naama Barkai
Journal:  Genome Res       Date:  2008-04-30       Impact factor: 9.043

6.  Body-methylated genes in Arabidopsis thaliana are functionally important and evolve slowly.

Authors:  Shohei Takuno; Brandon S Gaut
Journal:  Mol Biol Evol       Date:  2011-08-02       Impact factor: 16.240

Review 7.  RNA-directed DNA methylation: an epigenetic pathway of increasing complexity.

Authors:  Marjori A Matzke; Rebecca A Mosher
Journal:  Nat Rev Genet       Date:  2014-05-08       Impact factor: 53.242

8.  DNA methylation and the frequency of CpG in animal DNA.

Authors:  A P Bird
Journal:  Nucleic Acids Res       Date:  1980-04-11       Impact factor: 16.971

9.  Variant histone H2A.Z is globally localized to the promoters of inactive yeast genes and regulates nucleosome positioning.

Authors:  Benoît Guillemette; Alain R Bataille; Nicolas Gévry; Maryse Adam; Mathieu Blanchette; François Robert; Luc Gaudreau
Journal:  PLoS Biol       Date:  2005-11-01       Impact factor: 8.029

10.  Genome sequence comparison of Col and Ler lines reveals the dynamic nature of Arabidopsis chromosomes.

Authors:  Piotr A Ziolkowski; Grzegorz Koczyk; Lukasz Galganski; Jan Sadowski
Journal:  Nucleic Acids Res       Date:  2009-03-21       Impact factor: 16.971
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  23 in total

1.  Chromatin and Epigenetics.

Authors:  Anna Amtmann; Hong Ma; Doris Wagner
Journal:  Plant Physiol       Date:  2015-08       Impact factor: 8.340

Review 2.  Sex and the flower - developmental aspects of sex chromosome evolution.

Authors:  Roman Hobza; Vojtech Hudzieczek; Zdenek Kubat; Radim Cegan; Boris Vyskot; Eduard Kejnovsky; Bohuslav Janousek
Journal:  Ann Bot       Date:  2018-12-31       Impact factor: 4.357

3.  A protein complex regulates RNA processing of intronic heterochromatin-containing genes in Arabidopsis.

Authors:  Cheng-Guo Duan; Xingang Wang; Lingrui Zhang; Xiansong Xiong; Zhengjing Zhang; Kai Tang; Li Pan; Chuan-Chih Hsu; Huawei Xu; W Andy Tao; Heng Zhang; Jian-Kang Zhu
Journal:  Proc Natl Acad Sci U S A       Date:  2017-08-14       Impact factor: 11.205

4.  Epigenetic diversity of Saccharum spp. accessions assessed by methylation-sensitive amplification polymorphism (MSAP).

Authors:  Alessandra Alves Martins; Marcel F da Silva; Luciana Rossini Pinto
Journal:  3 Biotech       Date:  2020-05-24       Impact factor: 2.406

5.  Tissue and/or developmental stage specific methylation of nrDNA in Capsicum annuum.

Authors:  Ayse Gul Ince; Mehmet Karaca
Journal:  J Plant Res       Date:  2021-04-22       Impact factor: 2.629

6.  The histone H3 variant H3.3 regulates gene body DNA methylation in Arabidopsis thaliana.

Authors:  Heike Wollmann; Hume Stroud; Ramesh Yelagandula; Yoshiaki Tarutani; Danhua Jiang; Li Jing; Bhagyshree Jamge; Hidenori Takeuchi; Sarah Holec; Xin Nie; Tetsuji Kakutani; Steven E Jacobsen; Frédéric Berger
Journal:  Genome Biol       Date:  2017-05-18       Impact factor: 13.583

7.  Genomic and epigenomic immunity in common bean: the unusual features of NB-LRR gene family.

Authors:  Manon M S Richard; Ariane Gratias; Vincent Thareau; Kyung Do Kim; Sandrine Balzergue; Johann Joets; Scott A Jackson; Valérie Geffroy
Journal:  DNA Res       Date:  2018-04-01       Impact factor: 4.458

8.  Combining a Simple Method for DNA/RNA/Protein Co-Purification and Arabidopsis Protoplast Assay to Facilitate Viroid Research.

Authors:  Jian Jiang; Junfei Ma; Bin Liu; Ying Wang
Journal:  Viruses       Date:  2019-04-03       Impact factor: 5.048

9.  Intragenic heterochromatin-mediated alternative polyadenylation modulates miRNA and pollen development in rice.

Authors:  Li-Yuan You; Juncheng Lin; Hua-Wei Xu; Chun-Xiang Chen; Jun-Yu Chen; Jinshan Zhang; Jian Zhang; Ying-Xin Li; Congting Ye; Hui Zhang; Jing Jiang; Jian-Kang Zhu; Qingshun Q Li; Cheng-Guo Duan
Journal:  New Phytol       Date:  2021-08-08       Impact factor: 10.323

10.  Transcriptional regulation of genes bearing intronic heterochromatin in the rice genome.

Authors:  Nino A Espinas; Le Ngoc Tu; Leonardo Furci; Yasuka Shimajiri; Yoshiko Harukawa; Saori Miura; Shohei Takuno; Hidetoshi Saze
Journal:  PLoS Genet       Date:  2020-03-18       Impact factor: 5.917
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