Literature DB >> 26139371

Critical Role of Histone Turnover in Neuronal Transcription and Plasticity.

Ian Maze1, Wendy Wenderski2, Kyung-Min Noh2, Rosemary C Bagot3, Nikos Tzavaras4, Immanuel Purushothaman3, Simon J Elsässer2, Yin Guo5, Carolina Ionete5, Yasmin L Hurd6, Carol A Tamminga7, Tobias Halene8, Lorna Farrelly4, Alexey A Soshnev2, Duancheng Wen9, Shahin Rafii10, Marc R Birtwistle4, Schahram Akbarian11, Bruce A Buchholz12, Robert D Blitzer13, Eric J Nestler6, Zuo-Fei Yuan14, Benjamin A Garcia14, Li Shen3, Henrik Molina15, C David Allis16.   

Abstract

Turnover and exchange of nucleosomal histones and their variants, a process long believed to be static in post-replicative cells, remains largely unexplored in brain. Here, we describe a novel mechanistic role for HIRA (histone cell cycle regulator) and proteasomal degradation-associated histone dynamics in the regulation of activity-dependent transcription, synaptic connectivity, and behavior. We uncover a dramatic developmental profile of nucleosome occupancy across the lifespan of both rodents and humans, with the histone variant H3.3 accumulating to near-saturating levels throughout the neuronal genome by mid-adolescence. Despite such accumulation, H3.3-containing nucleosomes remain highly dynamic-in a modification-independent manner-to control neuronal- and glial-specific gene expression patterns throughout life. Manipulating H3.3 dynamics in both embryonic and adult neurons confirmed its essential role in neuronal plasticity and cognition. Our findings establish histone turnover as a critical and previously undocumented regulator of cell type-specific transcription and plasticity in mammalian brain.
Copyright © 2015 Elsevier Inc. All rights reserved.

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Year:  2015        PMID: 26139371      PMCID: PMC4491146          DOI: 10.1016/j.neuron.2015.06.014

Source DB:  PubMed          Journal:  Neuron        ISSN: 0896-6273            Impact factor:   17.173


  23 in total

1.  Dynamics of histone H3 deposition in vivo reveal a nucleosome gap-filling mechanism for H3.3 to maintain chromatin integrity.

Authors:  Dominique Ray-Gallet; Adam Woolfe; Isabelle Vassias; Céline Pellentz; Nicolas Lacoste; Aastha Puri; David C Schultz; Nikolay A Pchelintsev; Peter D Adams; Lars E T Jansen; Geneviève Almouzni
Journal:  Mol Cell       Date:  2011-12-23       Impact factor: 17.970

2.  Similar temporal and spatial recruitment of native 19S and 20S proteasome subunits to transcriptionally active chromatin.

Authors:  Fuqiang Geng; William P Tansey
Journal:  Proc Natl Acad Sci U S A       Date:  2012-04-02       Impact factor: 11.205

3.  Activity-dependent growth of new dendritic spines is regulated by the proteasome.

Authors:  Andrew M Hamilton; Won Chan Oh; Hugo Vega-Ramirez; Ivar S Stein; Johannes W Hell; Gentry N Patrick; Karen Zito
Journal:  Neuron       Date:  2012-06-21       Impact factor: 17.173

4.  Extremely long-lived nuclear pore proteins in the rat brain.

Authors:  Jeffrey N Savas; Brandon H Toyama; Tao Xu; John R Yates; Martin W Hetzer
Journal:  Science       Date:  2012-02-02       Impact factor: 47.728

5.  Identification of long-lived proteins reveals exceptional stability of essential cellular structures.

Authors:  Brandon H Toyama; Jeffrey N Savas; Sung Kyu Park; Michael S Harris; Nicholas T Ingolia; John R Yates; Martin W Hetzer
Journal:  Cell       Date:  2013-08-29       Impact factor: 41.582

Review 6.  Histone regulation in the CNS: basic principles of epigenetic plasticity.

Authors:  Ian Maze; Kyung-Min Noh; C David Allis
Journal:  Neuropsychopharmacology       Date:  2012-07-25       Impact factor: 7.853

7.  Dynamics of oligodendrocyte generation and myelination in the human brain.

Authors:  Maggie S Y Yeung; Sofia Zdunek; Olaf Bergmann; Samuel Bernard; Mehran Salehpour; Kanar Alkass; Shira Perl; John Tisdale; Göran Possnert; Lou Brundin; Henrik Druid; Jonas Frisén
Journal:  Cell       Date:  2014-11-06       Impact factor: 41.582

8.  Histone H3.1 and H3.3 complexes mediate nucleosome assembly pathways dependent or independent of DNA synthesis.

Authors:  Hideaki Tagami; Dominique Ray-Gallet; Geneviève Almouzni; Yoshihiro Nakatani
Journal:  Cell       Date:  2004-01-09       Impact factor: 41.582

9.  Hira-dependent histone H3.3 deposition facilitates PRC2 recruitment at developmental loci in ES cells.

Authors:  Laura A Banaszynski; Duancheng Wen; Scott Dewell; Sarah J Whitcomb; Mingyan Lin; Nichole Diaz; Simon J Elsässer; Ariane Chapgier; Aaron D Goldberg; Eli Canaani; Shahin Rafii; Deyou Zheng; C David Allis
Journal:  Cell       Date:  2013-09-26       Impact factor: 41.582

10.  The activity-dependent histone variant H2BE modulates the life span of olfactory neurons.

Authors:  Stephen W Santoro; Catherine Dulac
Journal:  Elife       Date:  2012-12-13       Impact factor: 8.140

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  108 in total

1.  Back to the past in schizophrenia genomics.

Authors:  Andrew J Sharp; Schahram Akbarian
Journal:  Nat Neurosci       Date:  2016-01       Impact factor: 24.884

2.  Replication- and transcription-independent histone exchange in oocytes.

Authors:  Katrina Woolcock
Journal:  Nat Struct Mol Biol       Date:  2015-12       Impact factor: 15.369

Review 3.  Neuroepigenetic mechanisms underlying fear extinction: emerging concepts.

Authors:  Paul R Marshall; Timothy W Bredy
Journal:  Psychopharmacology (Berl)       Date:  2018-11-30       Impact factor: 4.530

4.  Chromatin Is the Same in a Relative Way (But You're Older).

Authors:  Rosibel J Mason; Thomas M Vondriska
Journal:  Circ Res       Date:  2019-07-03       Impact factor: 17.367

Review 5.  The chromatin landscape of neuronal plasticity.

Authors:  Margaret Herre; Erica Korb
Journal:  Curr Opin Neurobiol       Date:  2019-06-04       Impact factor: 6.627

6.  Robust gene expression changes in the ganglia following subclinical reactivation in rhesus macaques infected with simian varicella virus.

Authors:  Nicole Arnold; Christine Meyer; Flora Engelmann; Ilhem Messaoudi
Journal:  J Neurovirol       Date:  2017-03-20       Impact factor: 2.643

Review 7.  The roles of histone variants in fine-tuning chromatin organization and function.

Authors:  Sara Martire; Laura A Banaszynski
Journal:  Nat Rev Mol Cell Biol       Date:  2020-07-14       Impact factor: 94.444

Review 8.  The emerging field of epigenetics in neurodegeneration and neuroprotection.

Authors:  Jee-Yeon Hwang; Kelly A Aromolaran; R Suzanne Zukin
Journal:  Nat Rev Neurosci       Date:  2017-05-18       Impact factor: 34.870

Review 9.  Activity-Regulated Transcription: Bridging the Gap between Neural Activity and Behavior.

Authors:  Ee-Lynn Yap; Michael E Greenberg
Journal:  Neuron       Date:  2018-10-24       Impact factor: 17.173

10.  Histone Hypervariants H2A.Z.1 and H2A.Z.2 Play Independent and Context-Specific Roles in Neuronal Activity-Induced Transcription of Arc/Arg3.1 and Other Immediate Early Genes.

Authors:  Carissa J Dunn; Pushpita Sarkar; Emma R Bailey; Shannon Farris; Meilan Zhao; James M Ward; Serena M Dudek; Ramendra N Saha
Journal:  eNeuro       Date:  2017-08-24
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