Literature DB >> 23993091

Identification of long-lived proteins reveals exceptional stability of essential cellular structures.

Brandon H Toyama1, Jeffrey N Savas2, Sung Kyu Park2, Michael S Harris3, Nicholas T Ingolia4, John R Yates5, Martin W Hetzer6.   

Abstract

Intracellular proteins with long lifespans have recently been linked to age-dependent defects, ranging from decreased fertility to the functional decline of neurons. Why long-lived proteins exist in metabolically active cellular environments and how they are maintained over time remains poorly understood. Here, we provide a system-wide identification of proteins with exceptional lifespans in the rat brain. These proteins are inefficiently replenished despite being translated robustly throughout adulthood. Using nucleoporins as a paradigm for long-term protein persistence, we found that nuclear pore complexes (NPCs) are maintained over a cell's life through slow but finite exchange of even its most stable subcomplexes. This maintenance is limited, however, as some nucleoporin levels decrease during aging, providing a rationale for the previously observed age-dependent deterioration of NPC function. Our identification of a long-lived proteome reveals cellular components that are at increased risk for damage accumulation, linking long-term protein persistence to the cellular aging process. PAPERCLIP:
Copyright © 2013 Elsevier Inc. All rights reserved.

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Year:  2013        PMID: 23993091      PMCID: PMC3788602          DOI: 10.1016/j.cell.2013.07.037

Source DB:  PubMed          Journal:  Cell        ISSN: 0092-8674            Impact factor:   41.582


  48 in total

1.  Rapid degradation of a large fraction of newly synthesized proteins by proteasomes.

Authors:  U Schubert; L C Antón; J Gibbs; C C Norbury; J W Yewdell; J R Bennink
Journal:  Nature       Date:  2000-04-13       Impact factor: 49.962

2.  Nucleosome remodeling induced by RNA polymerase II: loss of the H2A/H2B dimer during transcription.

Authors:  Maria L Kireeva; Wendy Walter; Vladimir Tchernajenko; Vladimir Bondarenko; Mikhail Kashlev; Vasily M Studitsky
Journal:  Mol Cell       Date:  2002-03       Impact factor: 17.970

Review 3.  Lens organelle degradation.

Authors:  Steven Bassnett
Journal:  Exp Eye Res       Date:  2002-01       Impact factor: 3.467

4.  Large-scale analysis of the yeast proteome by multidimensional protein identification technology.

Authors:  M P Washburn; D Wolters; J R Yates
Journal:  Nat Biotechnol       Date:  2001-03       Impact factor: 54.908

5.  Effect of collagen turnover on the accumulation of advanced glycation end products.

Authors:  N Verzijl; J DeGroot; S R Thorpe; R A Bank; J N Shaw; T J Lyons; J W Bijlsma; F P Lafeber; J W Baynes; J M TeKoppele
Journal:  J Biol Chem       Date:  2000-12-15       Impact factor: 5.157

6.  Gene-expression profile of the ageing brain in mice.

Authors:  C K Lee; R Weindruch; T A Prolla
Journal:  Nat Genet       Date:  2000-07       Impact factor: 38.330

7.  Age-dependent deterioration of nuclear pore complexes causes a loss of nuclear integrity in postmitotic cells.

Authors:  Maximiliano A D'Angelo; Marcela Raices; Siler H Panowski; Martin W Hetzer
Journal:  Cell       Date:  2009-01-23       Impact factor: 41.582

8.  Genome-wide analysis in vivo of translation with nucleotide resolution using ribosome profiling.

Authors:  Nicholas T Ingolia; Sina Ghaemmaghami; John R S Newman; Jonathan S Weissman
Journal:  Science       Date:  2009-02-12       Impact factor: 47.728

9.  Kinetics of core histones in living human cells: little exchange of H3 and H4 and some rapid exchange of H2B.

Authors:  H Kimura; P R Cook
Journal:  J Cell Biol       Date:  2001-06-25       Impact factor: 10.539

10.  Dynamic distribution of linker histone H1.5 in cellular differentiation.

Authors:  Jing-Yu Li; Michaela Patterson; Hanna K A Mikkola; William E Lowry; Siavash K Kurdistani
Journal:  PLoS Genet       Date:  2012-08-30       Impact factor: 5.917

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  234 in total

Review 1.  Proteomics of the Synapse--A Quantitative Approach to Neuronal Plasticity.

Authors:  Daniela C Dieterich; Michael R Kreutz
Journal:  Mol Cell Proteomics       Date:  2015-08-25       Impact factor: 5.911

2.  Lamin-B in systemic inflammation, tissue homeostasis, and aging.

Authors:  Haiyang Chen; Xiaobin Zheng; Yixian Zheng
Journal:  Nucleus       Date:  2015-04-15       Impact factor: 4.197

3.  Exercise attenuates age-associated changes in motoneuron number, nucleocytoplasmic transport proteins and neuromuscular health.

Authors:  Ashley Gillon; Kathrine Nielsen; Charlotte Steel; Jon Cornwall; Philip Sheard
Journal:  Geroscience       Date:  2018-05-07       Impact factor: 7.713

4.  NUP98 Sets the Size-Exclusion Diffusion Limit through the Ciliary Base.

Authors:  S Joseph Endicott; Martina Brueckner
Journal:  Curr Biol       Date:  2018-05-03       Impact factor: 10.834

5.  Ectopic Expression Induces Abnormal Somatodendritic Distribution of Tau in the Mouse Brain.

Authors:  Atsuko Kubo; Shouyou Ueda; Ayaka Yamane; Satoko Wada-Kakuda; Mai Narita; Makoto Matsuyama; Akane Nomori; Akihiko Takashima; Taisuke Kato; Osamu Onodera; Motohito Goto; Mamoru Ito; Takami Tomiyama; Hiroshi Mori; Shigeo Murayama; Yasuo Ihara; Hiroaki Misonou; Tomohiro Miyasaka
Journal:  J Neurosci       Date:  2019-06-24       Impact factor: 6.167

Review 6.  Intraneuronal protein aggregation as a trigger for inflammation and neurodegeneration in the aging brain.

Authors:  Antonio Currais; Wolfgang Fischer; Pamela Maher; David Schubert
Journal:  FASEB J       Date:  2017-01       Impact factor: 5.191

Review 7.  When function follows form: Nuclear compartment structure and the epigenetic landscape of the aging neuron.

Authors:  Johannes C M Schlachetzki; Tomohisa Toda; Jerome Mertens
Journal:  Exp Gerontol       Date:  2020-02-14       Impact factor: 4.032

8.  Remodeling of the H3 nucleosomal landscape during mouse aging.

Authors:  Yilin Chen; Juan I Bravo; Jyung Mean Son; Changhan Lee; Bérénice A Benayoun
Journal:  Transl Med Aging       Date:  2020-01-03

9.  Autoantibody-boosted T-cell reactivation in the target organ triggers manifestation of autoimmune CNS disease.

Authors:  Anne-Christine Flach; Tanja Litke; Judith Strauss; Michael Haberl; César Cordero Gómez; Markus Reindl; Albert Saiz; Hans-Jörg Fehling; Jürgen Wienands; Francesca Odoardi; Fred Lühder; Alexander Flügel
Journal:  Proc Natl Acad Sci U S A       Date:  2016-03-08       Impact factor: 11.205

10.  A Nucleoporin Docks Protein Phosphatase 1 to Direct Meiotic Chromosome Segregation and Nuclear Assembly.

Authors:  Neil Hattersley; Dhanya Cheerambathur; Mark Moyle; Marine Stefanutti; Amelia Richardson; Kian-Yong Lee; Julien Dumont; Karen Oegema; Arshad Desai
Journal:  Dev Cell       Date:  2016-09-12       Impact factor: 12.270

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