Literature DB >> 32665685

The roles of histone variants in fine-tuning chromatin organization and function.

Sara Martire1, Laura A Banaszynski2.   

Abstract

Histones serve to both package and organize DNA within the nucleus. In addition to histone post-translational modification and chromatin remodelling complexes, histone variants contribute to the complexity of epigenetic regulation of the genome. Histone variants are characterized by a distinct protein sequence and a selection of designated chaperone systems and chromatin remodelling complexes that regulate their localization in the genome. In addition, histone variants can be enriched with specific post-translational modifications, which in turn can provide a scaffold for recruitment of variant-specific interacting proteins to chromatin. Thus, through these properties, histone variants have the capacity to endow specific regions of chromatin with unique character and function in a regulated manner. In this Review, we provide an overview of recent advances in our understanding of the contribution of histone variants to chromatin function in mammalian systems. First, we discuss new molecular insights into chaperone-mediated histone variant deposition. Next, we discuss mechanisms by which histone variants influence chromatin properties such as nucleosome stability and the local chromatin environment both through histone variant sequence-specific effects and through their role in recruiting different chromatin-associated complexes. Finally, we focus on histone variant function in the context of both embryonic development and human disease, specifically developmental syndromes and cancer.

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Year:  2020        PMID: 32665685      PMCID: PMC8245300          DOI: 10.1038/s41580-020-0262-8

Source DB:  PubMed          Journal:  Nat Rev Mol Cell Biol        ISSN: 1471-0072            Impact factor:   94.444


  237 in total

Review 1.  Histone variants--ancient wrap artists of the epigenome.

Authors:  Paul B Talbert; Steven Henikoff
Journal:  Nat Rev Mol Cell Biol       Date:  2010-03-03       Impact factor: 94.444

2.  Crystal structure of the nucleosome core particle at 2.8 A resolution.

Authors:  K Luger; A W Mäder; R K Richmond; D F Sargent; T J Richmond
Journal:  Nature       Date:  1997-09-18       Impact factor: 49.962

Review 3.  Histone exchange, chromatin structure and the regulation of transcription.

Authors:  Swaminathan Venkatesh; Jerry L Workman
Journal:  Nat Rev Mol Cell Biol       Date:  2015-02-04       Impact factor: 94.444

Review 4.  Variants of core histones and their roles in cell fate decisions, development and cancer.

Authors:  Marcus Buschbeck; Sandra B Hake
Journal:  Nat Rev Mol Cell Biol       Date:  2017-02-01       Impact factor: 94.444

Review 5.  The momentous role of N6-methyladenosine in lung cancer.

Authors:  Ruiyao Xu; Gaozong Pang; Qing Zhao; Lin Yang; Shu Chen; Long Jiang; Yuxian Shen; Wei Shao
Journal:  J Cell Physiol       Date:  2020-11-01       Impact factor: 6.384

Review 6.  Emerging roles of linker histones in regulating chromatin structure and function.

Authors:  Dmitry V Fyodorov; Bing-Rui Zhou; Arthur I Skoultchi; Yawen Bai
Journal:  Nat Rev Mol Cell Biol       Date:  2017-10-11       Impact factor: 94.444

Review 7.  Advances in epigenetics link genetics to the environment and disease.

Authors:  Giacomo Cavalli; Edith Heard
Journal:  Nature       Date:  2019-07-24       Impact factor: 49.962

Review 8.  Mechanistic insights into histone deposition and nucleosome assembly by the chromatin assembly factor-1.

Authors:  Paul V Sauer; Yajie Gu; Wallace H Liu; Francesca Mattiroli; Daniel Panne; Karolin Luger; Mair Ea Churchill
Journal:  Nucleic Acids Res       Date:  2018-11-02       Impact factor: 16.971

9.  A novel histone H4 variant H4G regulates rDNA transcription in breast cancer.

Authors:  Mengping Long; Xulun Sun; Wenjin Shi; An Yanru; Sophia T C Leung; Dongbo Ding; Manjinder S Cheema; Nicol MacPherson; Christopher J Nelson; Juan Ausio; Yan Yan; Toyotaka Ishibashi
Journal:  Nucleic Acids Res       Date:  2019-09-19       Impact factor: 16.971

10.  Tissue-specific expression of histone H3 variants diversified after species separation.

Authors:  Kazumitsu Maehara; Akihito Harada; Yuko Sato; Masaki Matsumoto; Keiichi I Nakayama; Hiroshi Kimura; Yasuyuki Ohkawa
Journal:  Epigenetics Chromatin       Date:  2015-09-17       Impact factor: 4.954

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  55 in total

Review 1.  Genome-wide and sister chromatid-resolved profiling of protein occupancy in replicated chromatin with ChOR-seq and SCAR-seq.

Authors:  Nataliya Petryk; Nazaret Reverón-Gómez; Cristina González-Aguilera; Maria Dalby; Robin Andersson; Anja Groth
Journal:  Nat Protoc       Date:  2021-08-06       Impact factor: 13.491

2.  Genome-wide identification of chromatin regulators in Sorghum bicolor.

Authors:  Yongfeng Hu; Xiaoliang Chen; Chao Zhou; Zhengquan He; Xiangling Shen
Journal:  3 Biotech       Date:  2022-04-22       Impact factor: 2.406

Review 3.  Molecular mechanisms of transgenerational epigenetic inheritance.

Authors:  Maximilian H Fitz-James; Giacomo Cavalli
Journal:  Nat Rev Genet       Date:  2022-01-04       Impact factor: 53.242

4.  Epigenetic Coregulation of Androgen Receptor Signaling.

Authors:  Rayzel C Fernandes; Damien A Leach; Charlotte L Bevan
Journal:  Adv Exp Med Biol       Date:  2022       Impact factor: 3.650

5.  Postmitotic accumulation of histone variant H3.3 in new cortical neurons establishes neuronal chromatin, transcriptome, and identity.

Authors:  Owen H Funk; Yaman Qalieh; Daniel Z Doyle; Mandy M Lam; Kenneth Y Kwan
Journal:  Proc Natl Acad Sci U S A       Date:  2022-08-05       Impact factor: 12.779

Review 6.  Relationships among smoking, oxidative stress, inflammation, macromolecular damage, and cancer.

Authors:  Andrew W Caliri; Stella Tommasi; Ahmad Besaratinia
Journal:  Mutat Res Rev Mutat Res       Date:  2021-01-11       Impact factor: 5.657

Review 7.  Histone tails as signaling antennas of chromatin.

Authors:  Yunhui Peng; Shuxiang Li; David Landsman; Anna R Panchenko
Journal:  Curr Opin Struct Biol       Date:  2020-12-03       Impact factor: 6.809

Review 8.  What Are the Potential Roles of Nuclear Perlecan and Other Heparan Sulphate Proteoglycans in the Normal and Malignant Phenotype.

Authors:  Anthony J Hayes; James Melrose
Journal:  Int J Mol Sci       Date:  2021-04-23       Impact factor: 5.923

Review 9.  Histone dynamics during DNA replication stress.

Authors:  Chia-Ling Hsu; Shin Yen Chong; Chia-Yeh Lin; Cheng-Fu Kao
Journal:  J Biomed Sci       Date:  2021-06-19       Impact factor: 8.410

10.  H2A.B is a cancer/testis factor involved in the activation of ribosome biogenesis in Hodgkin lymphoma.

Authors:  Xuanzhao Jiang; Jiayu Wen; Elizabeth Paver; Yu-Huan Wu; Gege Sun; Amanda Bullman; Jane E Dahlstrom; David J Tremethick; Tatiana A Soboleva
Journal:  EMBO Rep       Date:  2021-07-19       Impact factor: 9.071

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