Literature DB >> 26135136

Informatics resources for the Collaborative Cross and related mouse populations.

Andrew P Morgan1, Catherine E Welsh2.   

Abstract

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Year:  2015        PMID: 26135136      PMCID: PMC4633285          DOI: 10.1007/s00335-015-9581-z

Source DB:  PubMed          Journal:  Mamm Genome        ISSN: 0938-8990            Impact factor:   2.957


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  78 in total

1.  Studies on Hybrid Sterility. II. Localization of Sterility Factors in Drosophila Pseudoobscura Hybrids.

Authors:  T Dobzhansky
Journal:  Genetics       Date:  1936-03       Impact factor: 4.562

2.  Short read fragment assembly of bacterial genomes.

Authors:  Mark J Chaisson; Pavel A Pevzner
Journal:  Genome Res       Date:  2007-12-14       Impact factor: 9.043

Review 3.  Fine-mapping QTLs in advanced intercross lines and other outbred populations.

Authors:  Natalia M Gonzales; Abraham A Palmer
Journal:  Mamm Genome       Date:  2014-06-07       Impact factor: 2.957

4.  [Natural hybridization between two subspecies of the house mouse, Mus musculus domesticus and Mus musculus castaneus, near Lake Casitas, California].

Authors:  A Orth; T Adama; W Din; F Bonhomme
Journal:  Genome       Date:  1998-02       Impact factor: 2.166

5.  Subspecific origin and haplotype diversity in the laboratory mouse.

Authors:  Hyuna Yang; Jeremy R Wang; John P Didion; Ryan J Buus; Timothy A Bell; Catherine E Welsh; François Bonhomme; Alex Hon-Tsen Yu; Michael W Nachman; Jaroslav Pialek; Priscilla Tucker; Pierre Boursot; Leonard McMillan; Gary A Churchill; Fernando Pardo-Manuel de Villena
Journal:  Nat Genet       Date:  2011-05-29       Impact factor: 38.330

6.  Comparative analysis and visualization of multiple collinear genomes.

Authors:  Jeremy R Wang; Fernando Pardo-Manuel de Villena; Leonard McMillan
Journal:  BMC Bioinformatics       Date:  2012-03-21       Impact factor: 3.169

7.  Modeling host genetic regulation of influenza pathogenesis in the collaborative cross.

Authors:  Martin T Ferris; David L Aylor; Daniel Bottomly; Alan C Whitmore; Lauri D Aicher; Timothy A Bell; Birgit Bradel-Tretheway; Janine T Bryan; Ryan J Buus; Lisa E Gralinski; Bart L Haagmans; Leonard McMillan; Darla R Miller; Elizabeth Rosenzweig; William Valdar; Jeremy Wang; Gary A Churchill; David W Threadgill; Shannon K McWeeney; Michael G Katze; Fernando Pardo-Manuel de Villena; Ralph S Baric; Mark T Heise
Journal:  PLoS Pathog       Date:  2013-02-28       Impact factor: 6.823

8.  The UCSC Genome Browser database: 2014 update.

Authors:  Donna Karolchik; Galt P Barber; Jonathan Casper; Hiram Clawson; Melissa S Cline; Mark Diekhans; Timothy R Dreszer; Pauline A Fujita; Luvina Guruvadoo; Maximilian Haeussler; Rachel A Harte; Steve Heitner; Angie S Hinrichs; Katrina Learned; Brian T Lee; Chin H Li; Brian J Raney; Brooke Rhead; Kate R Rosenbloom; Cricket A Sloan; Matthew L Speir; Ann S Zweig; David Haussler; Robert M Kuhn; W James Kent
Journal:  Nucleic Acids Res       Date:  2013-11-21       Impact factor: 16.971

9.  Using the emerging Collaborative Cross to probe the immune system.

Authors:  J Phillippi; Y Xie; D R Miller; T A Bell; Z Zhang; A B Lenarcic; D L Aylor; S H Krovi; D W Threadgill; F Pardo-Manuel de Villena; W Wang; W Valdar; J A Frelinger
Journal:  Genes Immun       Date:  2013-11-07       Impact factor: 2.676

10.  A novel multi-alignment pipeline for high-throughput sequencing data.

Authors:  Shunping Huang; James Holt; Chia-Yu Kao; Leonard McMillan; Wei Wang
Journal:  Database (Oxford)       Date:  2014-06-18       Impact factor: 3.451

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  27 in total

1.  The Mouse Universal Genotyping Array: From Substrains to Subspecies.

Authors:  Andrew P Morgan; Chen-Ping Fu; Chia-Yu Kao; Catherine E Welsh; John P Didion; Liran Yadgary; Leeanna Hyacinth; Martin T Ferris; Timothy A Bell; Darla R Miller; Paola Giusti-Rodriguez; Randal J Nonneman; Kevin D Cook; Jason K Whitmire; Lisa E Gralinski; Mark Keller; Alan D Attie; Gary A Churchill; Petko Petkov; Patrick F Sullivan; Jennifer R Brennan; Leonard McMillan; Fernando Pardo-Manuel de Villena
Journal:  G3 (Bethesda)       Date:  2015-12-18       Impact factor: 3.154

Review 2.  High-Diversity Mouse Populations for Complex Traits.

Authors:  Michael C Saul; Vivek M Philip; Laura G Reinholdt; Elissa J Chesler
Journal:  Trends Genet       Date:  2019-05-24       Impact factor: 11.639

Review 3.  CNS repair and axon regeneration: Using genetic variation to determine mechanisms.

Authors:  Andrea Tedeschi; Takao Omura; Michael Costigan
Journal:  Exp Neurol       Date:  2016-05-06       Impact factor: 5.330

4.  A Loss-of-Function Mutation in the Integrin Alpha L (Itgal) Gene Contributes to Susceptibility to Salmonella enterica Serovar Typhimurium Infection in Collaborative Cross Strain CC042.

Authors:  Jing Zhang; Megan Teh; Danielle Malo; Jean Jaubert; Jamie Kim; Megan M Eva; Romain Cayrol; Rachel Meade; Anastasia Nijnik; Xavier Montagutelli
Journal:  Infect Immun       Date:  2019-12-17       Impact factor: 3.441

5.  Male Infertility Is Responsible for Nearly Half of the Extinction Observed in the Mouse Collaborative Cross.

Authors:  John R Shorter; Fanny Odet; David L Aylor; Wenqi Pan; Chia-Yu Kao; Chen-Ping Fu; Andrew P Morgan; Seth Greenstein; Timothy A Bell; Alicia M Stevans; Ryan W Feathers; Sunny Patel; Sarah E Cates; Ginger D Shaw; Darla R Miller; Elissa J Chesler; Leonard McMillian; Deborah A O'Brien; Fernando Pardo-Manuel de Villena
Journal:  Genetics       Date:  2017-06       Impact factor: 4.562

6.  Editor's Highlight: Candidate Risk Factors and Mechanisms for Tolvaptan-Induced Liver Injury Are Identified Using a Collaborative Cross Approach.

Authors:  Merrie Mosedale; Yunjung Kim; William J Brock; Sharin E Roth; Tim Wiltshire; J Scott Eaddy; Gregory R Keele; Robert W Corty; Yuying Xie; William Valdar; Paul B Watkins
Journal:  Toxicol Sci       Date:  2017-04-01       Impact factor: 4.849

7.  Human-relevant mechanisms and risk factors for TAK-875-Induced liver injury identified via a gene pathway-based approach in Collaborative Cross mice.

Authors:  Merrie Mosedale; Yanwei Cai; J Scott Eaddy; Patrick J Kirby; Francis S Wolenski; Yvonne Dragan; William Valdar
Journal:  Toxicology       Date:  2021-08-18       Impact factor: 4.571

8.  Genetic Basis of Aerobically Supported Voluntary Exercise: Results from a Selection Experiment with House Mice.

Authors:  David A Hillis; Liran Yadgary; George M Weinstock; Fernando Pardo-Manuel de Villena; Daniel Pomp; Alexandra S Fowler; Shizhong Xu; Frank Chan; Theodore Garland
Journal:  Genetics       Date:  2020-09-25       Impact factor: 4.562

9.  Identification of Candidate Risk Factor Genes for Human Idelalisib Toxicity Using a Collaborative Cross Approach.

Authors:  Merrie Mosedale; Yanwei Cai; John Scott Eaddy; Robert W Corty; Manisha Nautiyal; Paul B Watkins; William Valdar
Journal:  Toxicol Sci       Date:  2019-12-01       Impact factor: 4.849

10.  A platform for experimental precision medicine: The extended BXD mouse family.

Authors:  David G Ashbrook; Danny Arends; Pjotr Prins; Megan K Mulligan; Suheeta Roy; Evan G Williams; Cathleen M Lutz; Alicia Valenzuela; Casey J Bohl; Jesse F Ingels; Melinda S McCarty; Arthur G Centeno; Reinmar Hager; Johan Auwerx; Lu Lu; Robert W Williams
Journal:  Cell Syst       Date:  2021-01-19       Impact factor: 10.304

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