| Literature DB >> 26124924 |
Yong Gu1, Qiang-Sheng Dai2, Rui-Xi Hua2, Bing Zhang3, Jin-Hong Zhu4, Jian-Wen Huang5, Bin-Hui Xie6, Shi-Qiu Xiong7, Guo-Sheng Tan3, He-Ping Li2,3.
Abstract
PSCA gene plays an important role in cell adhesion, proliferation and survival. Increasing studies have focused on the association of PSCA gene rs2294008 C>T and rs2976392 G>A with cancer risk. However, the conclusions were inconsistent. Therefore, we performed a meta-analysis to elucidate whether there is a true association, or artifact. We systematically searched eligible studies from MEDLINE, EMBASE and CBM database. Odds ratios and 95% confidence intervals were used to evaluate the strength of the association. The final analysis included 32 studies consisting of 30028 cases and 38765 controls for the rs2294008 C>T polymorphism, and 14 studies with 8190 cases and 7176 controls for the rs2976392 G>A polymorphism. Consequently, the PSCA rs2294008 C>T polymorphism was significantly associated with increased overall cancer risk. Further stratifications indicated the increased risk was more pronounced for gastric (diffused type and non-gastric cardia adenocarcinoma) and bladder cancer. A similar association was observed for the rs2976392 G>A polymorphism. This meta-analysis demonstrated that both of the PSCA rs2294008 C>T and rs2976392 G>A polymorphisms are associated with increased cancer risk, especially for gastric cancer and bladder cancer. Further large-scale studies with different ethnicities and subtypes of gastric cancer are required to confirm the results from this meta-analysis.Entities:
Keywords: GWAS; PSCA; meta-analysis; polymorphism; susceptibility
Year: 2015 PMID: 26124924 PMCID: PMC4482246 DOI: 10.18632/genesandcancer.63
Source DB: PubMed Journal: Genes Cancer ISSN: 1947-6019
Figure 1Flow diagram of included studies for the association between PSCA polymorphisms and overall cancer susceptibility
Characteristics of studies included in the current meta-analysis
| Surname | Year | Cancer | Country | Ethnicity | Source | Genotype method | Case | Control | MAF | HWE | ||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| rs2294008 C>T polymorphism | CC | CT | TT | all | CC | CT | TT | all | ||||||||
| Sakamoto | 2008 | gastric | Japan | Asian | HB | GWAS | 96 | 700 | 728 | 1524 | 210 | 650 | 536 | 1396 | 0.62 | 0.574 |
| Sakamoto | 2008 | gastric | Korea | Asian | HB | Taqman | 133 | 461 | 277 | 871 | 122 | 176 | 92 | 390 | 0.46 | 0.069 |
| Matsuo | 2009 | gastric | Japan | Asian | HB | Taqman | 330 | 329 | 49 | 708 | 273 | 338 | 97 | 708 | 0.38 | 0.638 |
| Wu | 2009 | gastric | China | Asian | PB | PCR-RFLP | 759 | 819 | 132 | 1710 | 506 | 412 | 77 | 995 | 0.28 | 0.587 |
| Wu | 2009 | bladder | USA&European | Caucasian | HB | GWAS | 1288 | 2613 | 1137 | 5038 | 2842 | 4668 | 1853 | 9363 | 0.45 | 0.418 |
| Lu | 2010 | gastric | China | Asian | PB | PCR-RFLP | 547 | 404 | 72 | 1023 | 605 | 387 | 77 | 1069 | 0.25 | 0.166 |
| Ou | 2010 | gastric | China | Asian | HB | PCR/LDR | 85 | 93 | 18 | 196 | 132 | 96 | 18 | 246 | 0.27 | 0.924 |
| Wang | 2010 | bladder | China | Asian | HB | PCR-RFLP | 272 | 259 | 50 | 581 | 316 | 220 | 44 | 580 | 0.27 | 0.508 |
| Joung | 2011 | prostate | Korea | Asian | HB | MassARRAY | 45 | 98 | 49 | 192 | 47 | 84 | 37 | 168 | 0.47 | 0.963 |
| Lochhead | 2011 | gastric | Poland | Caucasian | PB | Taqman | 47 | 143 | 102 | 292 | 101 | 166 | 115 | 382 | 0.52 | 0.011 |
| Lochhead | 2011 | gastric | USA | Caucasian | PB | Taqman | 85 | 129 | 94 | 308 | 49 | 110 | 49 | 208 | 0.50 | 0.405 |
| Lochhead | 2011 | esophageal | USA | Caucasian | PB | Taqman | 61 | 63 | 34 | 158 | 49 | 110 | 49 | 208 | 0.50 | 0.405 |
| Song | 2011 | gastric | Korea | Asian | HB | PCR-RFLP | 576 | 1620 | 1049 | 3245 | 414 | 818 | 468 | 1700 | 0.52 | 0.130 |
| Zeng | 2011 | gastric | China | Asian | HB | PCR-RFLP | 202 | 216 | 42 | 460 | 289 | 223 | 37 | 549 | 0.27 | 0.493 |
| Fu | 2012 | bladder | European&USA | Caucasian | PB | GWAS | 1363 | 2804 | 1226 | 5393 | 2107 | 3645 | 1572 | 7324 | 0.46 | 0.952 |
| Kim | 2012 | breast | Korea | Asian | HB | MassARRAY | 119 | 216 | 116 | 451 | 113 | 240 | 106 | 459 | 0.49 | 0.324 |
| Li | 2012 | gastric | China | Asian | PB | MassARRAY | 124 | 141 | 35 | 300 | 168 | 111 | 21 | 300 | 0.26 | 0.650 |
| Sala | 2012 | gastric | European | Caucasian | PB | Taqman | 93 | 198 | 118 | 409 | 491 | 714 | 310 | 1515 | 0.44 | 0.088 |
| Smith | 2012 | colorectal | UK | Caucasian | HB | Taqman | 25 | 39 | 13 | 77 | 287 | 387 | 130 | 804 | 0.40 | 0.130 |
| Ma | 2013 | bladder | China | Asian | PB | MassARRAY | 84 | 80 | 11 | 175 | 543 | 355 | 64 | 962 | 0.25 | 0.563 |
| Ono | 2013 | gallbladder | Japan | Asian | HB | Taqman | 9 | 23 | 12 | 44 | 30 | 75 | 68 | 173 | 0.61 | 0.242 |
| Rai | 2013 | gallbladder | India | Asian | HB | Taqman | 104 | 233 | 68 | 405 | 79 | 126 | 42 | 247 | 0.43 | 0.493 |
| Rizzato | 2013 | gastric | Germany | Caucasian | PB | Taqman | 23 | 86 | 69 | 178 | 231 | 507 | 319 | 1057 | 0.54 | 0.269 |
| Zhao | 2013 | gastric | China | Asian | PB | DHPLC | 275 | 342 | 100 | 717 | 465 | 401 | 85 | 951 | 0.30 | 0.913 |
| Dai | 2014 | esophageal | China | Asian | PB | Taqman | 1232 | 724 | 127 | 2083 | 1222 | 851 | 147 | 2220 | 0.26 | 0.944 |
| Sun | 2014 | gastric | USA | African | HB | Taqman | 17 | 64 | 49 | 130 | 30 | 63 | 32 | 125 | 0.51 | 0.926 |
| Wang | 2014 | bladder | China | Asian | PB | Taqman | 604 | 509 | 97 | 1210 | 566 | 376 | 66 | 1008 | 0.25 | 0.739 |
| Lee | 2014 | bladder | Korea | Asian | HB | HRM | 70 | 222 | 119 | 411 | 414 | 818 | 468 | 1700 | 0.52 | 0.130 |
| Kupcinskas | 2014 | gastric | Lithuania | Caucasian | HB | Taqman | 33 | 116 | 102 | 251 | 64 | 123 | 56 | 243 | 0.48 | 0.834 |
| Sun | 2015 | gastric | China | Asian | HB | Taqman | 322 | 309 | 61 | 692 | 405 | 297 | 72 | 774 | 0.28 | 0.105 |
| Ichikawa | 2015 | gastric | Japan | Asian | HB | PCR-RFLP | 24 | 104 | 65 | 193 | 52 | 119 | 95 | 266 | 0.58 | 0.185 |
| Garcia-Gonzalez | 2015 | gastric | Spain | Caucasian | HB | Taqman | 154 | 302 | 147 | 603 | 199 | 346 | 130 | 675 | 0.45 | 0.349 |
| rs2976392 G>A polymorphism | GG | AG | AA | all | GG | AG | AA | all | ||||||||
| Sakamoto | 2008 | gastric | Japan | Asian | HB | GWAS | 97 | 691 | 737 | 1525 | 211 | 650 | 536 | 1397 | 0.62 | 0.545 |
| Sakamoto | 2008 | gastric | Korea | Asian | HB | Taqman | 134 | 453 | 278 | 865 | 122 | 175 | 93 | 390 | 0.46 | 0.054 |
| Matsuo | 2009 | gastric | Japan | Asian | HB | Taqman | 331 | 328 | 48 | 707 | 274 | 337 | 96 | 707 | 0.37 | 0.635 |
| Wu | 2009 | gastric | China | Asian | PB | PCR-RFLP | 789 | 793 | 142 | 1724 | 492 | 429 | 81 | 1002 | 0.29 | 0.350 |
| Lu | 2010 | gastric | China | Asian | PB | PCR-RFLP | 500 | 464 | 79 | 1043 | 602 | 402 | 78 | 1082 | 0.26 | 0.336 |
| Ou | 2010 | gastric | China | Asian | HB | PCR/LDR | 99 | 85 | 12 | 196 | 130 | 102 | 14 | 246 | 0.26 | 0.298 |
| Joung | 2011 | prostate | Korea | Asian | HB | MassARRAY | 45 | 100 | 49 | 194 | 46 | 85 | 37 | 168 | 0.47 | 0.848 |
| Shen | 2011 | gastric | China | Asian | PB | DHPLC | 24 | 31 | 5 | 60 | 29 | 26 | 5 | 60 | 0.30 | 0.806 |
| Kim | 2012 | breast | Korea | Asian | HB | MassARRAY | 121 | 217 | 115 | 453 | 115 | 239 | 106 | 460 | 0.49 | 0.397 |
| Ono | 2013 | gallbladder | Japan | Asian | HB | Taqman | 9 | 23 | 12 | 44 | 29 | 76 | 68 | 173 | 0.61 | 0.328 |
| Ju | 2013 | gastric | China | Asian | HB | sequencing | 67 | 65 | 23 | 155 | 107 | 87 | 16 | 210 | 0.28 | 0.771 |
| Wang | 2014 | gastric | China | Asian | HB | Taqman | 131 | 134 | 18 | 283 | 149 | 108 | 18 | 275 | 0.26 | 0.791 |
| Kupcinskas | 2014 | gastric | Lithuania | Caucasian | HB | Taqman | 34 | 113 | 102 | 249 | 62 | 116 | 54 | 232 | 0.48 | 0.986 |
| Sun | 2015 | gastric | China | Asian | HB | Taqman | 319 | 308 | 65 | 692 | 403 | 299 | 72 | 774 | 0.29 | 0.130 |
HB, Hospital based; PB, Population based; GWAS, Genome wide association study; PCR-RFLP, Polymorphism chain reaction-restriction fragment length polymorphism; PCR-LDR, Polymorphism chain reaction-ligase detection reaction; DHPLC, Denaturing high performance liquid chromatography; HRM, High resolution melting; MAF, Minor allele frequency; HWE, Hardy-Weinberg equilibrium.
Meta-analysis of the association between PSCA rs2294008 C>T and rs2976392 G>A polymorphisms and cancer risk
| Variables | No. of studies | Homozygous | Heterozygous | Recessive | Dominant | Allele Comparing | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| OR (95% CI) | OR (95% CI) | OR (95% CI) | OR (95% CI) | OR (95% CI) | |||||||
| rs2294008 C>T | TT vs. CC | CT vs. CC | TT vs. (CT + CC) | (CT + TT) vs. CC | T vs. C | ||||||
| All | 32 | 1.41 (1.23-1.61) | <0.001 | 1.31 (1.19-1.43) | <0.001 | 1.19 (1.10-1.29) | <0.001 | 1.34 (1.21-1.48) | <0.001 | 1.20 (1.13-1.28) | <0.001 |
| Cancer type | |||||||||||
| Gastric | 19 | 1.64 (1.32-2.03) | <0.001 | 1.44 (1.26-1.64) | <0.001 | 1.28 (1.12-1.46) | <0.001 | 1.51 (1.30-1.75) | <0.001 | 1.29 (1.18-1.41) | <0.001 |
| Bladder | 6 | 1.29 (1.21-1.38) | 0.572 | 1.25 (1.18-1.32) | 0.356 | 1.13 (1.07-1.19) | 0.676 | 1.26 (1.20-1.32) | 0.414 | 1.14 (1.11-1.18) | 0.423 |
| Others | 7 | 0.95 (0.77-1.17) | 0.238 | 0.93 (0.74-1.18) | 0.012 | 0.99 (0.85-1.15) | 0.634 | 0.94 (0.75-1.17) | 0.012 | 0.96 (0.85-1.09) | 0.054 |
| Ethnicity | |||||||||||
| Asian | 21 | 1.34 (1.09-1.64) | <0.001 | 1.35 (1.19-1.54) | <0.001 | 1.11 (0.98-1.25) | <0.001 | 1.36 (1.18-1.56) | <0.001 | 1.18 (1.08-1.29) | <0.001 |
| Caucasian | 10 | 1.48 (1.23-1.78) | <0.001 | 1.20 (1.03-1.39) | <0.001 | 1.30 (1.15-1.47) | 0.002 | 1.28 (1.10-1.49) | <0.001 | 1.21 (1.11-1.34) | <0.001 |
| African | 1 | 2.70 (1.29-5.68) | / | 1.79 (0.90-3.57) | / | 1.76 (1.03-3.01) | / | 2.10 (1.09-4.04) | / | 1.60 (1.13-2.28) | / |
| Source of control | |||||||||||
| HB | 19 | 1.46 (1.20-1.78) | <0.001 | 1.39 (1.22-1.57) | <0.001 | 1.18 (1.04-1.33) | <0.001 | 1.42 (1.23-1.64) | <0.001 | 1.21 (1.11-1.32) | <0.001 |
| PB | 13 | 1.33 (1.10-1.60) | <0.001 | 1.21 (1.05-1.40) | <0.001 | 1.20 (1.07-1.36) | 0.010 | 1.25 (1.08-1.44) | <0.001 | 1.18 (1.07-1.30) | <0.001 |
| Subtype | |||||||||||
| Intestinal | 13 | 1.42 (1.05-1.92) | <0.001 | 1.36 (1.13-1.62) | <0.001 | 1.19 (0.98-1.44) | <0.001 | 1.39 (1.13-1.71) | <0.001 | 1.22 (1.06-1.41) | <0.001 |
| Diffuse | 13 | 2.45 (1.68-3.57) | <0.001 | 1.72 (1.28-2.30) | <0.001 | 1.67 (1.37-2.03) | 0.002 | 1.93 (1.41-2.63) | <0.001 | 1.52 (1.31-1.78) | <0.001 |
| Sites | |||||||||||
| GCA | 6 | 1.14 (0.90-1.43) | 0.660 | 1.18 (1.02-1.36) | 0.712 | 1.05 (0.85-1.30) | 0.546 | 1.17 (1.02-1.34) | 0.765 | 1.10 (1.00-1.22) | 0.822 |
| NGCA | 6 | 1.54 (1.31-1.81) | 0.143 | 1.39 (1.25-1.55) | 0.743 | 1.32 (1.15-1.52) | 0.185 | 1.42 (1.28-1.58) | 0.583 | 1.28 (1.19-1.38) | 0.327 |
| rs2976392 G>A | AA vs. GG | AG vs. GG | AA vs. (AG + GG) | (AG + AA) vs. GG | A vs. G | ||||||
| All | 14 | 1.35 (0.95-1.91) | <0.001 | 1.32 (1.10-1.58) | <0.001 | 1.14 (0.92-1.41) | <0.001 | 1.35 (1.09-1.66) | <0.001 | 1.19 (1.03-1.37) | <0.001 |
| Cancer type | |||||||||||
| Gastric | 11 | 1.47 (0.97-2.22) | <0.001 | 1.40 (1.14-1.71) | <0.001 | 1.18 (0.91-1.52) | <0.001 | 1.44 (1.13-1.83) | <0.001 | 1.24 (1.06-1.46) | <0.001 |
| Others | 3 | 1.04 (0.75-1.45) | 0.323 | 0.95 (0.74-1.23) | 0.547 | 1.03 (0.74-1.44) | 0.215 | 0.98 (0.77-1.24) | 0.477 | 1.01 (0.83-1.22) | 0.251 |
| Ethnicity | |||||||||||
| Asian | 13 | 1.25 (0.88-1.79) | <0.001 | 1.29 (1.07-1.56) | <0.001 | 1.07 (0.87-1.33) | <0.001 | 1.30 (1.05-1.61) | <0.001 | 1.15 (1.00-1.32) | <0.001 |
| Caucasian | 1 | 3.44 (2.02-5.87) | / | 1.78 (1.09-2.91) | / | 2.29 (1.54-3.40) | / | 2.31 (1.45-3.67) | / | 1.88 (1.45-2.43) | / |
| Source of control | |||||||||||
| HB | 11 | 1.40 (0.89-2.18) | <0.001 | 1.32 (1.03-1.70) | <0.001 | 1.16 (0.89-1.51) | <0.001 | 1.36 (1.01-1.83) | <0.001 | 1.19 (0.99-1.44) | <0.001 |
| PB | 3 | 1.15 (0.92-1.43) | 0.889 | 1.26 (1.10-1.45) | 0.297 | 1.03 (0.84-1.28) | 0.988 | 1.25 (1.09-1.42) | 0.314 | 1.15 (1.05-1.25) | 0.426 |
| Subtype | |||||||||||
| Intestinal | 4 | 1.85 (1.16-2.93) | 0.004 | 1.55 (1.26-1.90) | 0.209 | 1.31 (1.00-1.73) | 0.039 | 1.67 (1.26-2.22) | 0.034 | 1.36 (1.15-1.61) | 0.025 |
| Diffuse | 4 | 3.30 (2.11-5.14) | 0.022 | 2.40 (1.43-4.03) | <0.001 | 1.66 (1.45-1.91) | 0.984 | 2.64 (1.51-4.59) | <0.001 | 1.67 (1.48-1.89) | 0.231 |
HB, hospital based; PB, population based; GCA, gastric cardia adenocarcinoma; NGCA, non-gastric cardia adenocarcinoma.