Literature DB >> 26100376

Geometric analysis of the Goldbeter minimal model for the embryonic cell cycle.

Ilona Kosiuk1, Peter Szmolyan2.   

Abstract

A minimal model describing the embryonic cell division cycle at the molecular level in eukaryotes is analyzed mathematically. It is known from numerical simulations that the corresponding three-dimensional system of ODEs has periodic solutions in certain parameter regimes. We prove the existence of a stable limit cycle and provide a detailed description on how the limit cycle is generated. The limit cycle corresponds to a relaxation oscillation of an auxiliary system, which is singularly perturbed and has the same orbits as the original model. The singular perturbation character of the auxiliary problem is caused by the occurrence of small Michaelis constants in the model. Essential pieces of the limit cycle of the auxiliary problem consist of segments of slow motion close to several branches of a two dimensional critical manifold which are connected by fast jumps. In addition, a new phenomenon of exchange of stability occurs at lines, where the branches of the two-dimensional critical manifold intersect. This novel type of relaxation oscillations is studied by combining standard results from geometric singular perturbation with several suitable blow-up transformations.

Keywords:  Blow-up method; Cell cycle; Enzyme kinetics; Geometric singular perturbation theory; Mitotic oscillator; Relaxation oscillations

Mesh:

Substances:

Year:  2015        PMID: 26100376     DOI: 10.1007/s00285-015-0905-0

Source DB:  PubMed          Journal:  J Math Biol        ISSN: 0303-6812            Impact factor:   2.259


  14 in total

Review 1.  A long twentieth century of the cell cycle and beyond.

Authors:  P Nurse
Journal:  Cell       Date:  2000-01-07       Impact factor: 41.582

Review 2.  Network dynamics and cell physiology.

Authors:  J J Tyson; K Chen; B Novak
Journal:  Nat Rev Mol Cell Biol       Date:  2001-12       Impact factor: 94.444

Review 3.  Modelling the fission yeast cell cycle.

Authors:  Akos Sveiczer; John J Tyson; Bela Novak
Journal:  Brief Funct Genomic Proteomic       Date:  2004-02

4.  A skeleton model for the network of cyclin-dependent kinases driving the mammalian cell cycle.

Authors:  Claude Gérard; Albert Goldbeter
Journal:  Interface Focus       Date:  2010-12-01       Impact factor: 3.906

5.  Modeling the control of DNA replication in fission yeast.

Authors:  B Novak; J J Tyson
Journal:  Proc Natl Acad Sci U S A       Date:  1997-08-19       Impact factor: 11.205

6.  A minimal cascade model for the mitotic oscillator involving cyclin and cdc2 kinase.

Authors:  A Goldbeter
Journal:  Proc Natl Acad Sci U S A       Date:  1991-10-15       Impact factor: 11.205

7.  Modeling the cell division cycle: cdc2 and cyclin interactions.

Authors:  J J Tyson
Journal:  Proc Natl Acad Sci U S A       Date:  1991-08-15       Impact factor: 11.205

8.  Geometric singular perturbation theory in biological practice.

Authors:  Geertje Hek
Journal:  J Math Biol       Date:  2009-04-05       Impact factor: 2.259

9.  Mathematical model of the fission yeast cell cycle with checkpoint controls at the G1/S, G2/M and metaphase/anaphase transitions.

Authors:  B Novak; A Csikasz-Nagy; B Gyorffy; K Chen; J J Tyson
Journal:  Biophys Chem       Date:  1998-05-05       Impact factor: 2.352

10.  Ultrasensitivity in biochemical systems controlled by covalent modification. Interplay between zero-order and multistep effects.

Authors:  A Goldbeter; D E Koshland
Journal:  J Biol Chem       Date:  1984-12-10       Impact factor: 5.157

View more
  3 in total

1.  Parameter-robustness analysis for a biochemical oscillator model describing the social-behaviour transition phase of myxobacteria.

Authors:  Hadi Taghvafard; Hildeberto Jardón-Kojakhmetov; Ming Cao
Journal:  Proc Math Phys Eng Sci       Date:  2018-01-24       Impact factor: 2.704

2.  Computational singular perturbation analysis of brain lactate metabolism.

Authors:  Dimitris G Patsatzis; Efstathios-Al Tingas; Dimitris A Goussis; S Mani Sarathy
Journal:  PLoS One       Date:  2019-12-17       Impact factor: 3.240

3.  A geometric analysis of the SIRS epidemiological model on a homogeneous network.

Authors:  Hildeberto Jardón-Kojakhmetov; Christian Kuehn; Andrea Pugliese; Mattia Sensi
Journal:  J Math Biol       Date:  2021-09-22       Impact factor: 2.259

  3 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.