Literature DB >> 26061583

A framework for implementation of organ effect models in TOPAS with benchmarks extended to proton therapy.

J Ramos-Méndez1, J Perl, J Schümann, J Shin, H Paganetti, B Faddegon.   

Abstract

The aim of this work was to develop a framework for modeling organ effects within TOPAS (TOol for PArticle Simulation), a wrapper of the Geant4 Monte Carlo toolkit that facilitates particle therapy simulation. The DICOM interface for TOPAS was extended to permit contour input, used to assign voxels to organs. The following dose response models were implemented: The Lyman-Kutcher-Burman model, the critical element model, the population based critical volume model, the parallel-serial model, a sigmoid-based model of Niemierko for normal tissue complication probability and tumor control probability (TCP), and a Poisson-based model for TCP. The framework allows easy manipulation of the parameters of these models and the implementation of other models. As part of the verification, results for the parallel-serial and Poisson model for x-ray irradiation of a water phantom were compared to data from the AAPM Task Group 166. When using the task group dose-volume histograms (DVHs), results were found to be sensitive to the number of points in the DVH, with differences up to 2.4%, some of which are attributable to differences between the implemented models. New results are given with the point spacing specified. When using Monte Carlo calculations with TOPAS, despite the relatively good match to the published DVH's, differences up to 9% were found for the parallel-serial model (for a maximum DVH difference of 2%) and up to 0.5% for the Poisson model (for a maximum DVH difference of 0.5%). However, differences of 74.5% (in Rectangle1), 34.8% (in PTV) and 52.1% (in Triangle) for the critical element, critical volume and the sigmoid-based models were found respectively. We propose a new benchmark for verification of organ effect models in proton therapy. The benchmark consists of customized structures in the spread out Bragg peak plateau, normal tissue, tumor, penumbra and in the distal region. The DVH's, DVH point spacing, and results of the organ effect models are provided. The models were used to calculate dose response for a Head and Neck patient to demonstrate functionality of the new framework and indicate the degree of variability between the models in proton therapy.

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Year:  2015        PMID: 26061583      PMCID: PMC4498397          DOI: 10.1088/0031-9155/60/13/5037

Source DB:  PubMed          Journal:  Phys Med Biol        ISSN: 0031-9155            Impact factor:   3.609


  26 in total

1.  Towards the elimination of Monte Carlo statistical fluctuation from dose volume histograms for radiotherapy treatment planning.

Authors:  J Sempau; A F Bielajew
Journal:  Phys Med Biol       Date:  2000-01       Impact factor: 3.609

2.  The use and QA of biologically related models for treatment planning: short report of the TG-166 of the therapy physics committee of the AAPM.

Authors:  X Allen Li; Markus Alber; Joseph O Deasy; Andrew Jackson; Kyung-Wook Ken Jee; Lawrence B Marks; Mary K Martel; Charles Mayo; Vitali Moiseenko; Alan E Nahum; Andrzej Niemierko; Vladimir A Semenenko; Ellen D Yorke
Journal:  Med Phys       Date:  2012-03       Impact factor: 4.071

3.  Dose response explorer: an integrated open-source tool for exploring and modelling radiotherapy dose-volume outcome relationships.

Authors:  I El Naqa; G Suneja; P E Lindsay; A J Hope; J R Alaly; M Vicic; J D Bradley; A Apte; J O Deasy
Journal:  Phys Med Biol       Date:  2006-10-19       Impact factor: 3.609

4.  A free program for calculating EUD-based NTCP and TCP in external beam radiotherapy.

Authors:  Hiram A Gay; Andrzej Niemierko
Journal:  Phys Med       Date:  2007-09-07       Impact factor: 2.685

Review 5.  Report of the AAPM Task Group No. 105: Issues associated with clinical implementation of Monte Carlo-based photon and electron external beam treatment planning.

Authors:  Indrin J Chetty; Bruce Curran; Joanna E Cygler; John J DeMarco; Gary Ezzell; Bruce A Faddegon; Iwan Kawrakow; Paul J Keall; Helen Liu; C M Charlie Ma; D W O Rogers; Jan Seuntjens; Daryoush Sheikh-Bagheri; Jeffrey V Siebers
Journal:  Med Phys       Date:  2007-12       Impact factor: 4.071

6.  Individualized survival curves improve satisfaction with cancer risk management decisions in women with BRCA1/2 mutations.

Authors:  Katrina Armstrong; Barbara Weber; Peter A Ubel; Nikki Peters; John Holmes; J Sanford Schwartz
Journal:  J Clin Oncol       Date:  2005-12-20       Impact factor: 44.544

7.  Simulation of large x-ray fields using independently measured source and geometry details.

Authors:  D Sawkey; B A Faddegon
Journal:  Med Phys       Date:  2009-12       Impact factor: 4.071

Review 8.  Range uncertainties in proton therapy and the role of Monte Carlo simulations.

Authors:  Harald Paganetti
Journal:  Phys Med Biol       Date:  2012-05-09       Impact factor: 3.609

9.  Efficient voxel navigation for proton therapy dose calculation in TOPAS and Geant4.

Authors:  J Schümann; H Paganetti; J Shin; B Faddegon; J Perl
Journal:  Phys Med Biol       Date:  2012-05-09       Impact factor: 3.609

10.  A modular method to handle multiple time-dependent quantities in Monte Carlo simulations.

Authors:  J Shin; J Perl; J Schümann; H Paganetti; B A Faddegon
Journal:  Phys Med Biol       Date:  2012-05-09       Impact factor: 3.609

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  2 in total

1.  The TOPAS tool for particle simulation, a Monte Carlo simulation tool for physics, biology and clinical research.

Authors:  Bruce Faddegon; José Ramos-Méndez; Jan Schuemann; Aimee McNamara; Jungwook Shin; Joseph Perl; Harald Paganetti
Journal:  Phys Med       Date:  2020-04-03       Impact factor: 2.685

2.  TOPAS-nBio: An Extension to the TOPAS Simulation Toolkit for Cellular and Sub-cellular Radiobiology.

Authors:  J Schuemann; A L McNamara; J Ramos-Méndez; J Perl; K D Held; H Paganetti; S Incerti; B Faddegon
Journal:  Radiat Res       Date:  2019-01-04       Impact factor: 2.841

  2 in total

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