Literature DB >> 26046436

Advancing Biological Understanding and Therapeutics Discovery with Small-Molecule Probes.

Stuart L Schreiber1, Joanne D Kotz2, Min Li3, Jeffrey Aubé4, Christopher P Austin5, John C Reed6, Hugh Rosen7, E Lucile White8, Larry A Sklar9, Craig W Lindsley10, Benjamin R Alexander11, Joshua A Bittker12, Paul A Clemons13, Andrea de Souza14, Michael A Foley14, Michelle Palmer14, Alykhan F Shamji13, Mathias J Wawer13, Owen McManus3, Meng Wu3, Beiyan Zou3, Haibo Yu3, Jennifer E Golden15, Frank J Schoenen15, Anton Simeonov5, Ajit Jadhav5, Michael R Jackson6, Anthony B Pinkerton6, Thomas D Y Chung6, Patrick R Griffin16, Benjamin F Cravatt7, Peter S Hodder17, William R Roush18, Edward Roberts17, Dong-Hoon Chung8, Colleen B Jonsson8, James W Noah8, William E Severson8, Subramaniam Ananthan8, Bruce Edwards9, Tudor I Oprea19, P Jeffrey Conn10, Corey R Hopkins10, Michael R Wood10, Shaun R Stauffer20, Kyle A Emmitte10.   

Abstract

Small-molecule probes can illuminate biological processes and aid in the assessment of emerging therapeutic targets by perturbing biological systems in a manner distinct from other experimental approaches. Despite the tremendous promise of chemical tools for investigating biology and disease, small-molecule probes were unavailable for most targets and pathways as recently as a decade ago. In 2005, the NIH launched the decade-long Molecular Libraries Program with the intent of innovating in and broadening access to small-molecule science. This Perspective describes how novel small-molecule probes identified through the program are enabling the exploration of biological pathways and therapeutic hypotheses not otherwise testable. These experiences illustrate how small-molecule probes can help bridge the chasm between biological research and the development of medicines but also highlight the need to innovate the science of therapeutic discovery.
Copyright © 2015 Elsevier Inc. All rights reserved.

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Year:  2015        PMID: 26046436      PMCID: PMC4564295          DOI: 10.1016/j.cell.2015.05.023

Source DB:  PubMed          Journal:  Cell        ISSN: 0092-8674            Impact factor:   41.582


  87 in total

1.  Alteration of lymphocyte trafficking by sphingosine-1-phosphate receptor agonists.

Authors:  Suzanne Mandala; Richard Hajdu; James Bergstrom; Elizabeth Quackenbush; Jenny Xie; James Milligan; Rosemary Thornton; Gan-Ju Shei; Deborah Card; CarolAnn Keohane; Mark Rosenbach; Jeffrey Hale; Christopher L Lynch; Kathleen Rupprecht; William Parsons; Hugh Rosen
Journal:  Science       Date:  2002-03-28       Impact factor: 47.728

2.  Too many roads not taken.

Authors:  Aled M Edwards; Ruth Isserlin; Gary D Bader; Stephen V Frye; Timothy M Willson; Frank H Yu
Journal:  Nature       Date:  2011-02-10       Impact factor: 49.962

3.  Small molecule activation of PKM2 in cancer cells induces serine auxotrophy.

Authors:  Charles Kung; Jeff Hixon; Sung Choe; Kevin Marks; Stefan Gross; Erin Murphy; Byron DeLaBarre; Giovanni Cianchetta; Shalini Sethumadhavan; Xiling Wang; Shunqi Yan; Yi Gao; Cheng Fang; Wentao Wei; Fan Jiang; Shaohui Wang; Kevin Qian; Jeff Saunders; Ed Driggers; Hin Koon Woo; Kaiko Kunii; Stuart Murray; Hua Yang; Katharine Yen; Wei Liu; Lewis C Cantley; Matthew G Vander Heiden; Shinsan M Su; Shengfang Jin; Francesco G Salituro; Lenny Dang
Journal:  Chem Biol       Date:  2012-09-21

4.  Novel inhibitors for PRMT1 discovered by high-throughput screening using activity-based fluorescence polarization.

Authors:  Myles B C Dillon; Daniel A Bachovchin; Steven J Brown; M G Finn; Hugh Rosen; Benjamin F Cravatt; Kerri A Mowen
Journal:  ACS Chem Biol       Date:  2012-04-20       Impact factor: 5.100

5.  Automated Structure-Activity Relationship Mining: Connecting Chemical Structure to Biological Profiles.

Authors:  Mathias J Wawer; David E Jaramillo; Vlado Dančík; Daniel M Fass; Stephen J Haggarty; Alykhan F Shamji; Bridget K Wagner; Stuart L Schreiber; Paul A Clemons
Journal:  J Biomol Screen       Date:  2014-04-07

6.  An aldol-based build/couple/pair strategy for the synthesis of medium- and large-sized rings: discovery of macrocyclic histone deacetylase inhibitors.

Authors:  Lisa A Marcaurelle; Eamon Comer; Sivaraman Dandapani; Jeremy R Duvall; Baudouin Gerard; Sarathy Kesavan; Maurice D Lee; Haibo Liu; Jason T Lowe; Jean-Charles Marie; Carol A Mulrooney; Bhaumik A Pandya; Ann Rowley; Troy D Ryba; Byung-Chul Suh; Jingqiang Wei; Damian W Young; Lakshmi B Akella; Nathan T Ross; Yan-Ling Zhang; Daniel M Fass; Surya A Reis; Wen-Ning Zhao; Stephen J Haggarty; Michelle Palmer; Michael A Foley
Journal:  J Am Chem Soc       Date:  2010-11-10       Impact factor: 15.419

7.  Induced pluripotent stem cell model recapitulates pathologic hallmarks of Gaucher disease.

Authors:  Leelamma M Panicker; Diana Miller; Tea Soon Park; Brijesh Patel; Judi L Azevedo; Ola Awad; M Athar Masood; Timothy D Veenstra; Ehud Goldin; Barbara K Stubblefield; Nahid Tayebi; Swamy K Polumuri; Stefanie N Vogel; Ellen Sidransky; Elias T Zambidis; Ricardo A Feldman
Journal:  Proc Natl Acad Sci U S A       Date:  2012-10-15       Impact factor: 11.205

Review 8.  Apolipoprotein e sets the stage: response to injury triggers neuropathology.

Authors:  Robert W Mahley; Yadong Huang
Journal:  Neuron       Date:  2012-12-06       Impact factor: 17.173

Review 9.  Subtype-selective allosteric modulators of muscarinic receptors for the treatment of CNS disorders.

Authors:  P Jeffrey Conn; Carrie K Jones; Craig W Lindsley
Journal:  Trends Pharmacol Sci       Date:  2009-02-07       Impact factor: 14.819

10.  Multiplex cytological profiling assay to measure diverse cellular states.

Authors:  Sigrun M Gustafsdottir; Vebjorn Ljosa; Katherine L Sokolnicki; J Anthony Wilson; Deepika Walpita; Melissa M Kemp; Kathleen Petri Seiler; Hyman A Carrel; Todd R Golub; Stuart L Schreiber; Paul A Clemons; Anne E Carpenter; Alykhan F Shamji
Journal:  PLoS One       Date:  2013-12-02       Impact factor: 3.240

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  62 in total

1.  Challenges with risk mitigation in academic drug discovery: finding the best solution.

Authors:  Anuradha Roy
Journal:  Expert Opin Drug Discov       Date:  2018-12-04       Impact factor: 6.098

2.  Investigation of miscellaneous hERG inhibition in large diverse compound collection using automated patch-clamp assay.

Authors:  Hai-bo Yu; Bei-yan Zou; Xiao-liang Wang; Min Li
Journal:  Acta Pharmacol Sin       Date:  2016-01       Impact factor: 6.150

3.  Liganding Functional Tyrosine Sites on Proteins Using Sulfur-Triazole Exchange Chemistry.

Authors:  Jeffrey W Brulet; Adam L Borne; Kun Yuan; Adam H Libby; Ku-Lung Hsu
Journal:  J Am Chem Soc       Date:  2020-04-24       Impact factor: 15.419

Review 4.  Chemical probes and drug leads from advances in synthetic planning and methodology.

Authors:  Christopher J Gerry; Stuart L Schreiber
Journal:  Nat Rev Drug Discov       Date:  2018-04-13       Impact factor: 84.694

5.  Probes &Drugs portal: an interactive, open data resource for chemical biology.

Authors:  Ctibor Skuta; Martin Popr; Tomas Muller; Jindrich Jindrich; Michal Kahle; David Sedlak; Daniel Svozil; Petr Bartunek
Journal:  Nat Methods       Date:  2017-07-28       Impact factor: 28.547

6.  Fluorescence polarization assays in high-throughput screening and drug discovery: a review.

Authors:  Matthew D Hall; Adam Yasgar; Tyler Peryea; John C Braisted; Ajit Jadhav; Anton Simeonov; Nathan P Coussens
Journal:  Methods Appl Fluoresc       Date:  2016-04-28       Impact factor: 3.009

7.  Discovery of small molecule inhibitors for the C. elegans caspase CED-3 by high-throughput screening.

Authors:  Scott J Brantley; Steven W Cotten; David R Lamson; Ginger R Smith; Rihe Liu; Kevin P Williams
Journal:  Biochem Biophys Res Commun       Date:  2017-07-18       Impact factor: 3.575

Review 8.  Applications of chemogenomic library screening in drug discovery.

Authors:  Lyn H Jones; Mark E Bunnage
Journal:  Nat Rev Drug Discov       Date:  2017-01-20       Impact factor: 84.694

Review 9.  The Bump-and-Hole Tactic: Expanding the Scope of Chemical Genetics.

Authors:  Kabirul Islam
Journal:  Cell Chem Biol       Date:  2018-08-02       Impact factor: 8.116

Review 10.  Advances in discovering small molecules to probe protein function in a systems context.

Authors:  Shelby K Doyle; Marius S Pop; Helen L Evans; Angela N Koehler
Journal:  Curr Opin Chem Biol       Date:  2015-11-23       Impact factor: 8.822

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