Literature DB >> 26615565

Advances in discovering small molecules to probe protein function in a systems context.

Shelby K Doyle1, Marius S Pop1, Helen L Evans1, Angela N Koehler2.   

Abstract

High throughput screening (HTS) has historically been used for drug discovery almost exclusively by the pharmaceutical industry. Due to a significant decrease in costs associated with establishing a high throughput facility and an exponential interest in discovering probes of development and disease associated biomolecules, HTS core facilities have become an integral part of most academic and non-profit research institutions over the past decade. This major shift has led to the development of new HTS methodologies extending beyond the capabilities and target classes used in classical drug discovery approaches such as traditional enzymatic activity-based screens. In this brief review we describe some of the most interesting developments in HTS technologies and methods for chemical probe discovery.
Copyright © 2015 Elsevier Ltd. All rights reserved.

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Year:  2015        PMID: 26615565      PMCID: PMC4731259          DOI: 10.1016/j.cbpa.2015.10.032

Source DB:  PubMed          Journal:  Curr Opin Chem Biol        ISSN: 1367-5931            Impact factor:   8.822


  50 in total

1.  High-throughput high-content imaging assays for identification and characterization of selective AXL pathway inhibitors.

Authors:  Huaping Tang; Jing Yang; Ding Ren Shen; Deepa Calambur; Mark Witmer; Sophie Wu; Brian Carpenter; Yaqun Zhang; Mian Gao; Keith Constantine; Litao Zhang; Mary Ellen Cvijic
Journal:  Assay Drug Dev Technol       Date:  2014 Jan-Feb       Impact factor: 1.738

Review 2.  Novel trends in high-throughput screening.

Authors:  Lorenz M Mayr; Dejan Bojanic
Journal:  Curr Opin Pharmacol       Date:  2009-09-21       Impact factor: 5.547

Review 3.  Advancing Biological Understanding and Therapeutics Discovery with Small-Molecule Probes.

Authors:  Stuart L Schreiber; Joanne D Kotz; Min Li; Jeffrey Aubé; Christopher P Austin; John C Reed; Hugh Rosen; E Lucile White; Larry A Sklar; Craig W Lindsley; Benjamin R Alexander; Joshua A Bittker; Paul A Clemons; Andrea de Souza; Michael A Foley; Michelle Palmer; Alykhan F Shamji; Mathias J Wawer; Owen McManus; Meng Wu; Beiyan Zou; Haibo Yu; Jennifer E Golden; Frank J Schoenen; Anton Simeonov; Ajit Jadhav; Michael R Jackson; Anthony B Pinkerton; Thomas D Y Chung; Patrick R Griffin; Benjamin F Cravatt; Peter S Hodder; William R Roush; Edward Roberts; Dong-Hoon Chung; Colleen B Jonsson; James W Noah; William E Severson; Subramaniam Ananthan; Bruce Edwards; Tudor I Oprea; P Jeffrey Conn; Corey R Hopkins; Michael R Wood; Shaun R Stauffer; Kyle A Emmitte
Journal:  Cell       Date:  2015-06-04       Impact factor: 41.582

Review 4.  Dual-pharmacophore DNA-encoded chemical libraries.

Authors:  Jörg Scheuermann; Dario Neri
Journal:  Curr Opin Chem Biol       Date:  2015-03-13       Impact factor: 8.822

5.  Discovery of selective ligands for telomeric RNA G-quadruplexes (TERRA) through 19F-NMR based fragment screening.

Authors:  Miguel Garavís; Blanca López-Méndez; Alvaro Somoza; Julen Oyarzabal; Claudio Dalvit; Alfredo Villasante; Ramón Campos-Olivas; Carlos González
Journal:  ACS Chem Biol       Date:  2014-05-28       Impact factor: 5.100

6.  Phenotypic assays identify azoramide as a small-molecule modulator of the unfolded protein response with antidiabetic activity.

Authors:  Suneng Fu; Abdullah Yalcin; Grace Y Lee; Ping Li; Jason Fan; Ana Paula Arruda; Benedicte M Pers; Mustafa Yilmaz; Kosei Eguchi; Gökhan S Hotamisligil
Journal:  Sci Transl Med       Date:  2015-06-17       Impact factor: 17.956

7.  Chemical biology. A small-molecule inhibitor of the aberrant transcription factor CBFβ-SMMHC delays leukemia in mice.

Authors:  Anuradha Illendula; John A Pulikkan; Hongliang Zong; Jolanta Grembecka; Liting Xue; Siddhartha Sen; Yunpeng Zhou; Adam Boulton; Aravinda Kuntimaddi; Yan Gao; Roger A Rajewski; Monica L Guzman; Lucio H Castilla; John H Bushweller
Journal:  Science       Date:  2015-02-13       Impact factor: 47.728

8.  A small molecule that binds and inhibits the ETV1 transcription factor oncoprotein.

Authors:  Marius S Pop; Nicolas Stransky; Colin W Garvie; Jean-Philippe Theurillat; Emily C Hartman; Timothy A Lewis; Cheng Zhong; Elizabeth K Culyba; Fallon Lin; Douglas S Daniels; Raymond Pagliarini; Lucienne Ronco; Angela N Koehler; Levi A Garraway
Journal:  Mol Cancer Ther       Date:  2014-04-15       Impact factor: 6.261

9.  Niche-based screening identifies small-molecule inhibitors of leukemia stem cells.

Authors:  Kimberly A Hartwell; Peter G Miller; Siddhartha Mukherjee; Alissa R Kahn; Alison L Stewart; David J Logan; Joseph M Negri; Mildred Duvet; Marcus Järås; Rishi Puram; Vlado Dancik; Fatima Al-Shahrour; Thomas Kindler; Zuzana Tothova; Shrikanta Chattopadhyay; Thomas Hasaka; Rajiv Narayan; Mingji Dai; Christina Huang; Sebastian Shterental; Lisa P Chu; J Erika Haydu; Jae Hung Shieh; David P Steensma; Benito Munoz; Joshua A Bittker; Alykhan F Shamji; Paul A Clemons; Nicola J Tolliday; Anne E Carpenter; D Gary Gilliland; Andrew M Stern; Malcolm A S Moore; David T Scadden; Stuart L Schreiber; Benjamin L Ebert; Todd R Golub
Journal:  Nat Chem Biol       Date:  2013-10-27       Impact factor: 15.040

10.  Modulators of hepatic lipoprotein metabolism identified in a search for small-molecule inducers of tribbles pseudokinase 1 expression.

Authors:  Marek M Nagiec; Adam P Skepner; Joseph Negri; Michelle Eichhorn; Nicolas Kuperwasser; Eamon Comer; Giovanni Muncipinto; Aravind Subramanian; Clary Clish; Kiran Musunuru; Jeremy R Duvall; Michael Foley; Jose R Perez; Michelle A J Palmer
Journal:  PLoS One       Date:  2015-03-26       Impact factor: 3.240

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  4 in total

Review 1.  Targeting Twist expression with small molecules.

Authors:  Haixiang Pei; Yunqi Li; Mingyao Liu; Yihua Chen
Journal:  Medchemcomm       Date:  2016-12-02       Impact factor: 3.597

2.  The Use of Informer Sets in Screening: Perspectives on an Efficient Strategy to Identify New Probes.

Authors:  Paul A Clemons; Joshua A Bittker; Florence F Wagner; Allison Hands; Vlado Dančík; Stuart L Schreiber; Amit Choudhary; Bridget K Wagner
Journal:  SLAS Discov       Date:  2021-06-16       Impact factor: 3.341

3.  Two Cycles with One Catch: Hydrazine in Ugi 4-CR and Its Postcyclizations.

Authors:  Yuanze Wang; Pravin Patil; Katarzyna Kurpiewska; Justyna Kalinowska-Tluscik; Alexander Dömling
Journal:  ACS Comb Sci       Date:  2017-02-17       Impact factor: 3.784

4.  Spatiotemporal identification of druggable binding sites using deep learning.

Authors:  Igor Kozlovskii; Petr Popov
Journal:  Commun Biol       Date:  2020-10-27
  4 in total

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