Literature DB >> 26042902

Copy number variants, aneuploidies, and human disease.

Christa Lese Martin1, Brianne E Kirkpatrick2, David H Ledbetter2.   

Abstract

In the perinatal setting, chromosome imbalances cause a range of clinically significant disorders and increase the risk for other particular phenotypes. As technologies have improved to detect increasingly smaller deletions and duplications, collectively referred to as copy number variants (CNVs), clinicians are learning the significant role that these types of genomic variants play in human disease and their high frequency in ∼ 1% of all pregnancies. This article highlights key aspects of CNV detection and interpretation used during the course of clinical care in the prenatal and neonatal periods. Early diagnosis and accurate interpretation are important for targeted clinical management.
Copyright © 2015 Elsevier Inc. All rights reserved.

Entities:  

Keywords:  Aneuploidy; CNV; Chromosomal microarray; Copy number variant; Genomic databases; Neonatal; Noninvasive prenatal testing; Prenatal

Mesh:

Year:  2015        PMID: 26042902      PMCID: PMC4459515          DOI: 10.1016/j.clp.2015.03.001

Source DB:  PubMed          Journal:  Clin Perinatol        ISSN: 0095-5108            Impact factor:   3.430


  33 in total

1.  Noninvasive whole-genome sequencing of a human fetus.

Authors:  Jacob O Kitzman; Matthew W Snyder; Mario Ventura; Alexandra P Lewis; Ruolan Qiu; Lavone E Simmons; Hilary S Gammill; Craig E Rubens; Donna A Santillan; Jeffrey C Murray; Holly K Tabor; Michael J Bamshad; Evan E Eichler; Jay Shendure
Journal:  Sci Transl Med       Date:  2012-06-06       Impact factor: 17.956

2.  Genome-wide fetal aneuploidy detection by maternal plasma DNA sequencing.

Authors:  Diana W Bianchi; Lawrence D Platt; James D Goldberg; Alfred Z Abuhamad; Amy J Sehnert; Richard P Rava
Journal:  Obstet Gynecol       Date:  2012-05       Impact factor: 7.661

Review 3.  Procedure-related risk of miscarriage following amniocentesis and chorionic villus sampling: a systematic review and meta-analysis.

Authors:  R Akolekar; J Beta; G Picciarelli; C Ogilvie; F D'Antonio
Journal:  Ultrasound Obstet Gynecol       Date:  2015-01       Impact factor: 7.299

4.  Rare copy number variants are an important cause of epileptic encephalopathies.

Authors:  Heather C Mefford; Simone C Yendle; Cynthia Hsu; Joseph Cook; Eileen Geraghty; Jacinta M McMahon; Orvar Eeg-Olofsson; Lynette G Sadleir; Deepak Gill; Bruria Ben-Zeev; Tally Lerman-Sagie; Mark Mackay; Jeremy L Freeman; Eva Andermann; James T Pelakanos; Ian Andrews; Geoffrey Wallace; Evan E Eichler; Samuel F Berkovic; Ingrid E Scheffer
Journal:  Ann Neurol       Date:  2011-12       Impact factor: 10.422

Review 5.  Consensus statement: chromosomal microarray is a first-tier clinical diagnostic test for individuals with developmental disabilities or congenital anomalies.

Authors:  David T Miller; Margaret P Adam; Swaroop Aradhya; Leslie G Biesecker; Arthur R Brothman; Nigel P Carter; Deanna M Church; John A Crolla; Evan E Eichler; Charles J Epstein; W Andrew Faucett; Lars Feuk; Jan M Friedman; Ada Hamosh; Laird Jackson; Erin B Kaminsky; Klaas Kok; Ian D Krantz; Robert M Kuhn; Charles Lee; James M Ostell; Carla Rosenberg; Stephen W Scherer; Nancy B Spinner; Dimitri J Stavropoulos; James H Tepperberg; Erik C Thorland; Joris R Vermeesch; Darrel J Waggoner; Michael S Watson; Christa Lese Martin; David H Ledbetter
Journal:  Am J Hum Genet       Date:  2010-05-14       Impact factor: 11.025

6.  Chromosomal microarray versus karyotyping for prenatal diagnosis.

Authors:  Ronald J Wapner; Christa Lese Martin; Brynn Levy; Blake C Ballif; Christine M Eng; Julia M Zachary; Melissa Savage; Lawrence D Platt; Daniel Saltzman; William A Grobman; Susan Klugman; Thomas Scholl; Joe Leigh Simpson; Kimberly McCall; Vimla S Aggarwal; Brian Bunke; Odelia Nahum; Ankita Patel; Allen N Lamb; Elizabeth A Thom; Arthur L Beaudet; David H Ledbetter; Lisa G Shaffer; Laird Jackson
Journal:  N Engl J Med       Date:  2012-12-06       Impact factor: 91.245

7.  An evidence-based approach to establish the functional and clinical significance of copy number variants in intellectual and developmental disabilities.

Authors:  Erin B Kaminsky; Vineith Kaul; Justin Paschall; Deanna M Church; Brian Bunke; Dawn Kunig; Daniel Moreno-De-Luca; Andres Moreno-De-Luca; Jennifer G Mulle; Stephen T Warren; Gabriele Richard; John G Compton; Amy E Fuller; Troy J Gliem; Shuwen Huang; Morag N Collinson; Sarah J Beal; Todd Ackley; Diane L Pickering; Denae M Golden; Emily Aston; Heidi Whitby; Shashirekha Shetty; Michael R Rossi; M Katharine Rudd; Sarah T South; Arthur R Brothman; Warren G Sanger; Ramaswamy K Iyer; John A Crolla; Erik C Thorland; Swaroop Aradhya; David H Ledbetter; Christa L Martin
Journal:  Genet Med       Date:  2011-09       Impact factor: 8.822

8.  A copy number variation morbidity map of developmental delay.

Authors:  Gregory M Cooper; Bradley P Coe; Santhosh Girirajan; Jill A Rosenfeld; Tiffany H Vu; Carl Baker; Charles Williams; Heather Stalker; Rizwan Hamid; Vickie Hannig; Hoda Abdel-Hamid; Patricia Bader; Elizabeth McCracken; Dmitriy Niyazov; Kathleen Leppig; Heidi Thiese; Marybeth Hummel; Nora Alexander; Jerome Gorski; Jennifer Kussmann; Vandana Shashi; Krys Johnson; Catherine Rehder; Blake C Ballif; Lisa G Shaffer; Evan E Eichler
Journal:  Nat Genet       Date:  2011-08-14       Impact factor: 38.330

9.  Informatics enhanced SNP microarray analysis of 30 miscarriage samples compared to routine cytogenetics.

Authors:  Ruth B Lathi; Jamie A M Massie; Megan Loring; Zachary P Demko; David Johnson; Styrmir Sigurjonsson; George Gemelos; Matthew Rabinowitz
Journal:  PLoS One       Date:  2012-03-05       Impact factor: 3.240

Review 10.  A genetic model for neurodevelopmental disease.

Authors:  Bradley P Coe; Santhosh Girirajan; Evan E Eichler
Journal:  Curr Opin Neurobiol       Date:  2012-05-02       Impact factor: 6.627

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  22 in total

Review 1.  Meiotic Recombination: The Essence of Heredity.

Authors:  Neil Hunter
Journal:  Cold Spring Harb Perspect Biol       Date:  2015-10-28       Impact factor: 10.005

Review 2.  Balancing Genetics (Science) and Counseling (Art) in Prenatal Chromosomal Microarray Testing.

Authors:  Allison Werner-Lin; Judith L M McCoyd; Barbara A Bernhardt
Journal:  J Genet Couns       Date:  2016-05-21       Impact factor: 2.537

Review 3.  Gene regulation and genetics in neurochemistry, past to future.

Authors:  Steven W Barger
Journal:  J Neurochem       Date:  2016-10-17       Impact factor: 5.372

4.  Sulfotransferase 1A3/4 copy number variation is associated with neurodegenerative disease.

Authors:  N J Butcher; M K Horne; G D Mellick; C J Fowler; C L Masters; R F Minchin
Journal:  Pharmacogenomics J       Date:  2017-04-04       Impact factor: 3.550

5.  "Something Extra on Chromosome 5": Parents' Understanding of Positive Prenatal Chromosomal Microarray Analysis (CMA) Results.

Authors:  Sarah A Walser; Allison Werner-Lin; Amita Russell; Ronald J Wapner; Barbara A Bernhardt
Journal:  J Genet Couns       Date:  2016-03-04       Impact factor: 2.537

6.  Copy Number Variation Disorders.

Authors:  Tamim H Shaikh
Journal:  Curr Genet Med Rep       Date:  2017-10-14

Review 7.  A cross-comparison of cognitive ability across 8 genomic disorders.

Authors:  Michael Mortillo; Jennifer G Mulle
Journal:  Curr Opin Genet Dev       Date:  2021-05-31       Impact factor: 4.665

8.  Generation of megabase-scale deletions, inversions and duplications involving the Contactin-6 gene in mice by CRISPR/Cas9 technology.

Authors:  Alexei N Korablev; Irina A Serova; Oleg L Serov
Journal:  BMC Genet       Date:  2017-12-28       Impact factor: 2.797

9.  Differences between the genomes of lymphoblastoid cell lines and blood-derived samples.

Authors:  Lena M Joesch-Cohen; Gustavo Glusman
Journal:  Adv Genomics Genet       Date:  2017-02-23

10.  Polyploid mitosis and depolyploidization promote chromosomal instability and tumor progression in a Notch-induced tumor model.

Authors:  Xian-Feng Wang; Sheng-An Yang; Shangyu Gong; Chih-Hsuan Chang; Juan Martin Portilla; Deeptiman Chatterjee; Jerome Irianto; Hongcun Bao; Yi-Chun Huang; Wu-Min Deng
Journal:  Dev Cell       Date:  2021-06-18       Impact factor: 13.417

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