Literature DB >> 22560351

A genetic model for neurodevelopmental disease.

Bradley P Coe1, Santhosh Girirajan, Evan E Eichler.   

Abstract

The genetic basis of neurodevelopmental and neuropsychiatric diseases has been advanced by the discovery of large and recurrent copy number variants significantly enriched in cases when compared to controls. The pattern of this variation strongly implies that rare variants contribute significantly to neurological disease; that different genes will be responsible for similar diseases in different families; and that the same 'primary' genetic lesions can result in a different disease outcome depending potentially on the genetic background. Next-generation sequencing technologies are beginning to broaden the spectrum of disease-causing variation and provide specificity by pinpointing both genes and pathways for future diagnostics and therapeutics.
Copyright © 2012 Elsevier Ltd. All rights reserved.

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Year:  2012        PMID: 22560351      PMCID: PMC3437230          DOI: 10.1016/j.conb.2012.04.007

Source DB:  PubMed          Journal:  Curr Opin Neurobiol        ISSN: 0959-4388            Impact factor:   6.627


  67 in total

Review 1.  Structural variation in the human genome and its role in disease.

Authors:  Paweł Stankiewicz; James R Lupski
Journal:  Annu Rev Med       Date:  2010       Impact factor: 13.739

2.  Sensitive and accurate detection of copy number variants using read depth of coverage.

Authors:  Seungtai Yoon; Zhenyu Xuan; Vladimir Makarov; Kenny Ye; Jonathan Sebat
Journal:  Genome Res       Date:  2009-08-05       Impact factor: 9.043

3.  Rare chromosomal deletions and duplications increase risk of schizophrenia.

Authors: 
Journal:  Nature       Date:  2008-07-30       Impact factor: 49.962

4.  Copy number variants in schizophrenia: confirmation of five previous findings and new evidence for 3q29 microdeletions and VIPR2 duplications.

Authors:  Douglas F Levinson; Jubao Duan; Sang Oh; Kai Wang; Alan R Sanders; Jianxin Shi; Nancy Zhang; Bryan J Mowry; Ann Olincy; Farooq Amin; C Robert Cloninger; Jeremy M Silverman; Nancy G Buccola; William F Byerley; Donald W Black; Kenneth S Kendler; Robert Freedman; Frank Dudbridge; Itsik Pe'er; Hakon Hakonarson; Sarah E Bergen; Ayman H Fanous; Peter A Holmans; Pablo V Gejman
Journal:  Am J Psychiatry       Date:  2011-02-01       Impact factor: 18.112

5.  De novo CNV analysis implicates specific abnormalities of postsynaptic signalling complexes in the pathogenesis of schizophrenia.

Authors:  G Kirov; A J Pocklington; P Holmans; D Ivanov; M Ikeda; D Ruderfer; J Moran; K Chambert; D Toncheva; L Georgieva; D Grozeva; M Fjodorova; R Wollerton; E Rees; I Nikolov; L N van de Lagemaat; A Bayés; E Fernandez; P I Olason; Y Böttcher; N H Komiyama; M O Collins; J Choudhary; K Stefansson; H Stefansson; S G N Grant; S Purcell; P Sklar; M C O'Donovan; M J Owen
Journal:  Mol Psychiatry       Date:  2011-11-15       Impact factor: 15.992

6.  Sporadic autism exomes reveal a highly interconnected protein network of de novo mutations.

Authors:  Brian J O'Roak; Laura Vives; Santhosh Girirajan; Emre Karakoc; Niklas Krumm; Bradley P Coe; Roie Levy; Arthur Ko; Choli Lee; Joshua D Smith; Emily H Turner; Ian B Stanaway; Benjamin Vernot; Maika Malig; Carl Baker; Beau Reilly; Joshua M Akey; Elhanan Borenstein; Mark J Rieder; Deborah A Nickerson; Raphael Bernier; Jay Shendure; Evan E Eichler
Journal:  Nature       Date:  2012-04-04       Impact factor: 49.962

7.  Variations of the candidate SEZ6L2 gene on Chromosome 16p11.2 in patients with autism spectrum disorders and in human populations.

Authors:  Marina Konyukh; Richard Delorme; Pauline Chaste; Claire Leblond; Nathalie Lemière; Gudrun Nygren; Henrik Anckarsäter; Maria Rastam; Ola Ståhlberg; Frederique Amsellem; I Carina Gillberg; Marie Christine Mouren-Simeoni; Evelyn Herbrecht; Fabien Fauchereau; Roberto Toro; Christopher Gillberg; Marion Leboyer; Thomas Bourgeron
Journal:  PLoS One       Date:  2011-03-04       Impact factor: 3.240

8.  A copy number variation morbidity map of developmental delay.

Authors:  Gregory M Cooper; Bradley P Coe; Santhosh Girirajan; Jill A Rosenfeld; Tiffany H Vu; Carl Baker; Charles Williams; Heather Stalker; Rizwan Hamid; Vickie Hannig; Hoda Abdel-Hamid; Patricia Bader; Elizabeth McCracken; Dmitriy Niyazov; Kathleen Leppig; Heidi Thiese; Marybeth Hummel; Nora Alexander; Jerome Gorski; Jennifer Kussmann; Vandana Shashi; Krys Johnson; Catherine Rehder; Blake C Ballif; Lisa G Shaffer; Evan E Eichler
Journal:  Nat Genet       Date:  2011-08-14       Impact factor: 38.330

9.  Mutations causing syndromic autism define an axis of synaptic pathophysiology.

Authors:  Benjamin D Auerbach; Emily K Osterweil; Mark F Bear
Journal:  Nature       Date:  2011-11-23       Impact factor: 49.962

10.  Duplications of the neuropeptide receptor gene VIPR2 confer significant risk for schizophrenia.

Authors:  Vladimir Vacic; Shane McCarthy; Dheeraj Malhotra; Fiona Murray; Hsun-Hua Chou; Aine Peoples; Vladimir Makarov; Seungtai Yoon; Abhishek Bhandari; Roser Corominas; Lilia M Iakoucheva; Olga Krastoshevsky; Verena Krause; Verónica Larach-Walters; David K Welsh; David Craig; John R Kelsoe; Elliot S Gershon; Suzanne M Leal; Marie Dell Aquila; Derek W Morris; Michael Gill; Aiden Corvin; Paul A Insel; Jon McClellan; Mary-Claire King; Maria Karayiorgou; Deborah L Levy; Lynn E DeLisi; Jonathan Sebat
Journal:  Nature       Date:  2011-02-23       Impact factor: 49.962

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  20 in total

Review 1.  Copy number variants, aneuploidies, and human disease.

Authors:  Christa Lese Martin; Brianne E Kirkpatrick; David H Ledbetter
Journal:  Clin Perinatol       Date:  2015-04-01       Impact factor: 3.430

2.  A de novo microdeletion in NRXN1 in a Dutch patient with mild intellectual disability, microcephaly and gonadal dysgenesis.

Authors:  Zehra Agha; Zafar Iqbal; Tjitske Kleefstra; Christiane Zweier; Rolph Pfundt; Raheel Qamar; Hans VAN Bokhoven; Marjolein H Willemsen
Journal:  Genet Res (Camb)       Date:  2015-10-06       Impact factor: 1.588

3.  Combinatorial Targeting of Distributed Forebrain Networks Reverses Noise Hypersensitivity in a Model of Autism Spectrum Disorder.

Authors:  Miho Nakajima; L Ian Schmitt; Guoping Feng; Michael M Halassa
Journal:  Neuron       Date:  2019-10-21       Impact factor: 17.173

4.  Epilepsy subtype-specific copy number burden observed in a genome-wide study of 17 458 subjects.

Authors:  Lisa-Marie Niestroj; Eduardo Perez-Palma; Daniel P Howrigan; Yadi Zhou; Feixiong Cheng; Elmo Saarentaus; Peter Nürnberg; Remi Stevelink; Mark J Daly; Aarno Palotie; Dennis Lal
Journal:  Brain       Date:  2020-07-01       Impact factor: 13.501

5.  NCBP2 modulates neurodevelopmental defects of the 3q29 deletion in Drosophila and Xenopus laevis models.

Authors:  Mayanglambam Dhruba Singh; Matthew Jensen; Micaela Lasser; Emily Huber; Tanzeen Yusuff; Lucilla Pizzo; Brian Lifschutz; Inshya Desai; Alexis Kubina; Sneha Yennawar; Sydney Kim; Janani Iyer; Diego E Rincon-Limas; Laura Anne Lowery; Santhosh Girirajan
Journal:  PLoS Genet       Date:  2020-02-13       Impact factor: 5.917

6.  CANOES: detecting rare copy number variants from whole exome sequencing data.

Authors:  Daniel Backenroth; Jason Homsy; Laura R Murillo; Joe Glessner; Edwin Lin; Martina Brueckner; Richard Lifton; Elizabeth Goldmuntz; Wendy K Chung; Yufeng Shen
Journal:  Nucleic Acids Res       Date:  2014-04-25       Impact factor: 16.971

7.  Uncovering the etiology of autism spectrum disorders: genomics, bioinformatics, environment, data collection and exploration, and future possibilities.

Authors:  Sarah Pendergrass; Santhosh Girirajan; Scott Selleck
Journal:  Pac Symp Biocomput       Date:  2014

Review 8.  Modeling neurodevelopmental disorders using human pluripotent stem cells.

Authors:  Michael Telias; Dalit Ben-Yosef
Journal:  Stem Cell Rev Rep       Date:  2014-08       Impact factor: 5.739

9.  Neuroscience: Untangling autism.

Authors:  Scott Bolkan; Joshua A Gordon
Journal:  Nature       Date:  2016-03-23       Impact factor: 49.962

10.  Refinement and discovery of new hotspots of copy-number variation associated with autism spectrum disorder.

Authors:  Santhosh Girirajan; Megan Y Dennis; Carl Baker; Maika Malig; Bradley P Coe; Catarina D Campbell; Kenneth Mark; Tiffany H Vu; Can Alkan; Ze Cheng; Leslie G Biesecker; Raphael Bernier; Evan E Eichler
Journal:  Am J Hum Genet       Date:  2013-01-31       Impact factor: 11.025

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