Literature DB >> 26021595

ADAPT-NMR 3.0: utilization of BEST-type triple-resonance NMR experiments to accelerate the process of data collection and assignment.

Hesam Dashti1, Marco Tonelli, John L Markley.   

Abstract

ADAPT-NMR (Assignment-directed Data collection Algorithm utilizing a Probabilistic Toolkit in NMR) is a software package whose Bayesian core uses on-the-fly chemical shift assignments to guide data acquisition by non-uniform sampling from a panel of through-bond NMR experiments. The new version of ADAPT-NMR (ADAPT-NMR v3.0) has the option of utilizing 2D tilted-plane versions of 3D fast spectral acquisition with BEST-type pulse sequences, while also retaining the capability of acquiring and processing data from tilted-plane versions of conventional sensitivity-enhanced experiments. The use of BEST experiments significantly reduces data collection times and leads to enhanced performance by ADAPT-NMR.

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Year:  2015        PMID: 26021595      PMCID: PMC4687732          DOI: 10.1007/s10858-015-9950-7

Source DB:  PubMed          Journal:  J Biomol NMR        ISSN: 0925-2738            Impact factor:   2.835


  26 in total

1.  Fast multi-dimensional Hadamard spectroscopy.

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2.  Principles and features of single-scan two-dimensional NMR spectroscopy.

Authors:  Lucio Frydman; Adonis Lupulescu; Tali Scherf
Journal:  J Am Chem Soc       Date:  2003-07-30       Impact factor: 15.419

3.  Non-uniform frequency domain for optimal exploitation of non-uniform sampling.

Authors:  Krzysztof Kazimierczuk; Anna Zawadzka-Kazimierczuk; Wiktor Koźmiński
Journal:  J Magn Reson       Date:  2010-05-25       Impact factor: 2.229

4.  Cooling overall spin temperature: protein NMR experiments optimized for longitudinal relaxation effects.

Authors:  Michaël Deschamps; Iain D Campbell
Journal:  J Magn Reson       Date:  2005-10-24       Impact factor: 2.229

5.  High-resolution iterative frequency identification for NMR as a general strategy for multidimensional data collection.

Authors:  Hamid R Eghbalnia; Arash Bahrami; Marco Tonelli; Klaas Hallenga; John L Markley
Journal:  J Am Chem Soc       Date:  2005-09-14       Impact factor: 15.419

6.  Automated projection spectroscopy (APSY).

Authors:  Sebastian Hiller; Francesco Fiorito; Kurt Wüthrich; Gerhard Wider
Journal:  Proc Natl Acad Sci U S A       Date:  2005-07-25       Impact factor: 11.205

7.  Analysis of non-uniformly sampled spectra with multi-dimensional decomposition.

Authors:  Vladislav Yu Orekhov; Victor A Jaravine
Journal:  Prog Nucl Magn Reson Spectrosc       Date:  2011-02-24       Impact factor: 9.795

8.  Maximum Entropy Spectral Reconstruction of Non-Uniformly Sampled Data.

Authors:  Mehdi Mobli; Jeffrey C Hoch
Journal:  Concepts Magn Reson Part A Bridg Educ Res       Date:  2008-11-01       Impact factor: 0.481

Review 9.  Applications of non-uniform sampling and processing.

Authors:  Sven G Hyberts; Haribabu Arthanari; Gerhard Wagner
Journal:  Top Curr Chem       Date:  2012

10.  Highly efficient NMR assignment of intrinsically disordered proteins: application to B- and T cell receptor domains.

Authors:  Linnéa Isaksson; Maxim Mayzel; Maria Saline; Anders Pedersen; Joakim Rosenlöw; Bernhard Brutscher; B Göran Karlsson; Vladislav Y Orekhov
Journal:  PLoS One       Date:  2013-05-07       Impact factor: 3.240

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