Literature DB >> 16249110

Cooling overall spin temperature: protein NMR experiments optimized for longitudinal relaxation effects.

Michaël Deschamps1, Iain D Campbell.   

Abstract

In experiments performed on protonated proteins at high fields, 80% of the NMR spectrometer time is spent waiting for the (1)H atoms to recover their polarization after recording the free induction decay. Selective excitation of a fraction of the protons in a large molecule has previously been shown to lead to faster longitudinal relaxation for the selected protons [K. Pervushin, B. Vögeli, A. Eletsky, Longitudinal (1)H relaxation optimization in TROSY NMR spectroscopy, J. Am. Chem. Soc. 124 (2002) 12898-12902; P. Schanda, B. Brutscher, Very fast two-dimensional NMR spectroscopy for real-time investigation of dynamic events in proteins on the time scale of seconds, J. Am. Chem. Soc. 127 (2005) 8014-8015; H.S. Attreya, T. Szyperski, G-matrix Fourier transform NMR spectroscopy for complete protein resonance assignment, Proc. Natl. Acad. Sci. USA 101 (2004) 9642-9647]. The pool of non-selected protons acts as a "thermal bath" and spin-diffusion processes ("flip-flop" transitions) channel the excess energy from the excited pool to the non-selected protons in regions of the molecule where other relaxation processes can dissipate the excess energy. We present here a sensitivity enhanced HSQC sequence (COST-HSQC), based on one selective E-BURP pulse, which can be used on protonated (15)N enriched proteins (with or without (13)C isotopic enrichment). This experiment is compared to a gradient sensitivity enhanced HSQC with a water flip-back pulse (the water flip-back pulse quenches the spin diffusion between (1)H(N) and (1)H(alpha) spins). This experiment is shown to have significant advantages in some circumstances. Some observed limitations, namely sample overheating with short recovery delays and complex longitudinal relaxation behaviour are discussed and analysed.

Entities:  

Mesh:

Substances:

Year:  2005        PMID: 16249110     DOI: 10.1016/j.jmr.2005.09.011

Source DB:  PubMed          Journal:  J Magn Reson        ISSN: 1090-7807            Impact factor:   2.229


  10 in total

1.  Speeding up sequence specific assignment of IDPs.

Authors:  Wolfgang Bermel; Ivano Bertini; Isabella C Felli; Leonardo Gonnelli; Wiktor Koźmiński; Alessandro Piai; Roberta Pierattelli; Jan Stanek
Journal:  J Biomol NMR       Date:  2012-06-10       Impact factor: 2.835

2.  Highly automated protein backbone resonance assignment within a few hours: the "BATCH" strategy and software package.

Authors:  Ewen Lescop; Bernhard Brutscher
Journal:  J Biomol NMR       Date:  2009-04-15       Impact factor: 2.835

3.  Development and application of aromatic [(13)C, (1)H] SOFAST-HMQC NMR experiment for nucleic acids.

Authors:  Bharathwaj Sathyamoorthy; Janghyun Lee; Isaac Kimsey; Laura R Ganser; Hashim Al-Hashimi
Journal:  J Biomol NMR       Date:  2014-09-04       Impact factor: 2.835

4.  Spatially selective heteronuclear multiple-quantum coherence spectroscopy for biomolecular NMR studies.

Authors:  Bharathwaj Sathyamoorthy; David M Parish; Gaetano T Montelione; Rong Xiao; Thomas Szyperski
Journal:  Chemphyschem       Date:  2014-04-30       Impact factor: 3.102

5.  ADAPT-NMR 3.0: utilization of BEST-type triple-resonance NMR experiments to accelerate the process of data collection and assignment.

Authors:  Hesam Dashti; Marco Tonelli; John L Markley
Journal:  J Biomol NMR       Date:  2015-05-29       Impact factor: 2.835

6.  Exploring translocation of proteins on DNA by NMR.

Authors:  G Marius Clore
Journal:  J Biomol NMR       Date:  2011-08-17       Impact factor: 2.835

7.  "CON-CON" assignment strategy for highly flexible intrinsically disordered proteins.

Authors:  Alessandro Piai; Tomáš Hošek; Leonardo Gonnelli; Anna Zawadzka-Kazimierczuk; Wiktor Koźmiński; Bernhard Brutscher; Wolfgang Bermel; Roberta Pierattelli; Isabella C Felli
Journal:  J Biomol NMR       Date:  2014-10-19       Impact factor: 2.835

Review 8.  NMR-based investigations into target DNA search processes of proteins.

Authors:  Junji Iwahara; Levani Zandarashvili; Catherine A Kemme; Alexandre Esadze
Journal:  Methods       Date:  2018-05-10       Impact factor: 3.608

Review 9.  13C Direct Detected NMR for Challenging Systems.

Authors:  Isabella C Felli; Roberta Pierattelli
Journal:  Chem Rev       Date:  2022-01-13       Impact factor: 72.087

10.  An efficient combination of BEST and NUS methods in multidimensional NMR spectroscopy for high throughput analysis of proteins.

Authors:  Veera Mohana Rao Kakita; Mandar Bopardikar; Vaibhav Kumar Shukla; Kavitha Rachineni; Priyatosh Ranjan; Jai Shankar Singh; Ramakrishna V Hosur
Journal:  RSC Adv       Date:  2018-05-15       Impact factor: 3.361

  10 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.