Literature DB >> 25994084

Temperature dependence of DNA translocations through solid-state nanopores.

Daniel V Verschueren1, Magnus P Jonsson, Cees Dekker.   

Abstract

In order to gain a better physical understanding of DNA translocations through solid-state nanopores, we study the temperature dependence of λ-DNA translocations through 10 nm diameter silicon nitride nanopores, both experimentally and theoretically. The measured ionic conductance G, the DNA-induced ionic-conductance blockades [Formula: see text] and the event frequency Γ all increase with increasing temperature while the DNA translocation time τ decreases. G and [Formula: see text] are accurately described when bulk and surface conductances of the nanopore are considered and access resistance is incorporated appropriately. Viscous drag on the untranslocated part of the DNA coil is found to dominate the temperature dependence of the translocation times and the event rate is well described by a balance between diffusion and electrophoretic motion. The good fit between modeled and measured properties of DNA translocations through solid-state nanopores in this first comprehensive temperature study, suggest that our model captures the relevant physics of the process.

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Year:  2015        PMID: 25994084      PMCID: PMC4503867          DOI: 10.1088/0957-4484/26/23/234004

Source DB:  PubMed          Journal:  Nanotechnology        ISSN: 0957-4484            Impact factor:   3.874


  47 in total

1.  Rapid electronic detection of probe-specific microRNAs using thin nanopore sensors.

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Journal:  Nat Nanotechnol       Date:  2010-10-24       Impact factor: 39.213

2.  Slowing DNA translocation in a solid-state nanopore.

Authors:  Daniel Fologea; James Uplinger; Brian Thomas; David S McNabb; Jiali Li
Journal:  Nano Lett       Date:  2005-09       Impact factor: 11.189

3.  Electrokinetic-flow-induced viscous drag on a tethered DNA inside a nanopore.

Authors:  Sandip Ghosal
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2007-12-26

4.  DNA translocation governed by interactions with solid-state nanopores.

Authors:  Meni Wanunu; Jason Sutin; Ben McNally; Andrew Chow; Amit Meller
Journal:  Biophys J       Date:  2008-08-15       Impact factor: 4.033

5.  Rapid ultrasensitive single particle surface-enhanced Raman spectroscopy using metallic nanopores.

Authors:  Michael P Cecchini; Aeneas Wiener; Vladimir A Turek; Hyangh Chon; Sangyeop Lee; Aleksandar P Ivanov; David W McComb; Jaebum Choo; Tim Albrecht; Stefan A Maier; Joshua B Edel
Journal:  Nano Lett       Date:  2013-09-16       Impact factor: 11.189

6.  Data analysis methods for solid-state nanopores.

Authors:  Calin Plesa; Cees Dekker
Journal:  Nanotechnology       Date:  2015-02-03       Impact factor: 3.874

7.  Electrophoresis of a DNA coil near a nanopore.

Authors:  Payam Rowghanian; Alexander Y Grosberg
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2013-04-29

8.  Interpreting the conductance blockades of DNA translocations through solid-state nanopores.

Authors:  Autumn T Carlsen; Osama K Zahid; Jan Ruzicka; Ethan W Taylor; Adam R Hall
Journal:  ACS Nano       Date:  2014-04-25       Impact factor: 15.881

9.  Polymer capture by electro-osmotic flow of oppositely charged nanopores.

Authors:  C T A Wong; M Muthukumar
Journal:  J Chem Phys       Date:  2007-04-28       Impact factor: 3.488

10.  Electrostatic focusing of unlabelled DNA into nanoscale pores using a salt gradient.

Authors:  Meni Wanunu; Will Morrison; Yitzhak Rabin; Alexander Y Grosberg; Amit Meller
Journal:  Nat Nanotechnol       Date:  2009-12-20       Impact factor: 39.213

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  10 in total

Review 1.  Nanopore Sensing.

Authors:  Wenqing Shi; Alicia K Friedman; Lane A Baker
Journal:  Anal Chem       Date:  2016-11-18       Impact factor: 6.986

2.  Effects of Nanopore Charge Decorations on the Translocation Dynamics of DNA.

Authors:  Ining Jou; Murugappan Muthukumar
Journal:  Biophys J       Date:  2017-10-17       Impact factor: 4.033

3.  Molecular Dynamics Simulation of DNA Capture and Transport in Heated Nanopores.

Authors:  Maxim Belkin; Aleksei Aksimentiev
Journal:  ACS Appl Mater Interfaces       Date:  2016-03-21       Impact factor: 9.229

4.  Integrated solid-state nanopore platform for nanopore fabrication via dielectric breakdown, DNA-speed deceleration and noise reduction.

Authors:  Yusuke Goto; Itaru Yanagi; Kazuma Matsui; Takahide Yokoi; Ken-Ichi Takeda
Journal:  Sci Rep       Date:  2016-08-08       Impact factor: 4.379

5.  High Temperature Extends the Range of Size Discrimination of Nonionic Polymers by a Biological Nanopore.

Authors:  Fabien Piguet; Hadjer Ouldali; Françoise Discala; Marie-France Breton; Jan C Behrends; Juan Pelta; Abdelghani Oukhaled
Journal:  Sci Rep       Date:  2016-12-07       Impact factor: 4.379

6.  Active Delivery of Single DNA Molecules into a Plasmonic Nanopore for Label-Free Optical Sensing.

Authors:  Xin Shi; Daniel V Verschueren; Cees Dekker
Journal:  Nano Lett       Date:  2018-11-21       Impact factor: 11.189

7.  Thermostable virus portal proteins as reprogrammable adapters for solid-state nanopore sensors.

Authors:  Benjamin Cressiot; Sandra J Greive; Mehrnaz Mojtabavi; Alfred A Antson; Meni Wanunu
Journal:  Nat Commun       Date:  2018-11-07       Impact factor: 14.919

8.  Enhanced Optical Spectroscopy for Multiplexed DNA and Protein-Sequencing with Plasmonic Nanopores: Challenges and Prospects.

Authors:  Wang Li; Juan Zhou; Nicolò Maccaferri; Roman Krahne; Kang Wang; Denis Garoli
Journal:  Anal Chem       Date:  2022-01-01       Impact factor: 6.986

9.  Ionic heat dissipation in solid-state pores.

Authors:  Makusu Tsutsui; Akihide Arima; Kazumichi Yokota; Yoshinobu Baba; Tomoji Kawai
Journal:  Sci Adv       Date:  2022-02-11       Impact factor: 14.136

10.  Single Molecule Trapping and Sensing Using Dual Nanopores Separated by a Zeptoliter Nanobridge.

Authors:  Paolo Cadinu; Binoy Paulose Nadappuram; Dominic J Lee; Jasmine Y Y Sze; Giulia Campolo; Yanjun Zhang; Andrew Shevchuk; Sylvain Ladame; Tim Albrecht; Yuri Korchev; Aleksandar P Ivanov; Joshua B Edel
Journal:  Nano Lett       Date:  2017-09-08       Impact factor: 11.189

  10 in total

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