Literature DB >> 17477630

Polymer capture by electro-osmotic flow of oppositely charged nanopores.

C T A Wong1, M Muthukumar.   

Abstract

The authors have addressed theoretically the hydrodynamic effect on the translocation of DNA through nanopores. They consider the cases of nanopore surface charge being opposite to the charge of the translocating polymer. The authors show that, because of the high electric field across the nanopore in DNA translocation experiments, electro-osmotic flow is able to create an absorbing region comparable to the size of the polymer around the nanopore. Within this capturing region, the velocity gradient of the fluid flow is high enough for the polymer to undergo coil-stretch transition. The stretched conformation reduces the entropic barrier of translocation. The diffusion limited translocation rate is found to be proportional to the applied voltage. In the authors' theory, many experimental variables (electric field, surface potential, pore radius, dielectric constant, temperature, and salt concentration) appear through a single universal parameter. They have made quantitative predictions on the size of the adsorption region near the pore for the polymer and on the rate of translocation.

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Year:  2007        PMID: 17477630     DOI: 10.1063/1.2723088

Source DB:  PubMed          Journal:  J Chem Phys        ISSN: 0021-9606            Impact factor:   3.488


  35 in total

1.  Characterizing and controlling the motion of ssDNA in a solid-state nanopore.

Authors:  Binquan Luan; Glenn Martyna; Gustavo Stolovitzky
Journal:  Biophys J       Date:  2011-11-01       Impact factor: 4.033

2.  Theory of capture rate in polymer translocation.

Authors:  M Muthukumar
Journal:  J Chem Phys       Date:  2010-05-21       Impact factor: 3.488

3.  Deciphering ionic current signatures of DNA transport through a nanopore.

Authors:  Aleksei Aksimentiev
Journal:  Nanoscale       Date:  2010-02-02       Impact factor: 7.790

4.  Enhanced translocation of single DNA molecules through alpha-hemolysin nanopores by manipulation of internal charge.

Authors:  Giovanni Maglia; Marcela Rincon Restrepo; Ellina Mikhailova; Hagan Bayley
Journal:  Proc Natl Acad Sci U S A       Date:  2008-12-05       Impact factor: 11.205

5.  DNA capture and translocation through nanoscale pores-a fine balance of electrophoresis and electroosmosis.

Authors:  Allison Squires; Amit Meller
Journal:  Biophys J       Date:  2013-08-06       Impact factor: 4.033

6.  Mechanism of how salt-gradient-induced charges affect the translocation of DNA molecules through a nanopore.

Authors:  Yuhui He; Makusu Tsutsui; Ralph H Scheicher; Chun Fan; Masateru Taniguchi; Tomoji Kawai
Journal:  Biophys J       Date:  2013-08-06       Impact factor: 4.033

7.  Enhancement of charged macromolecule capture by nanopores in a salt gradient.

Authors:  Tom Chou
Journal:  J Chem Phys       Date:  2009-07-21       Impact factor: 3.488

8.  Origin of translocation barriers for polyelectrolyte chains.

Authors:  Rajeev Kumar; M Muthukumar
Journal:  J Chem Phys       Date:  2009-11-21       Impact factor: 3.488

9.  Electrostatic focusing of unlabelled DNA into nanoscale pores using a salt gradient.

Authors:  Meni Wanunu; Will Morrison; Yitzhak Rabin; Alexander Y Grosberg; Amit Meller
Journal:  Nat Nanotechnol       Date:  2009-12-20       Impact factor: 39.213

10.  Sampling a biomarker of the human immunodeficiency virus across a synthetic nanopore.

Authors:  David J Niedzwiecki; Raghuvaran Iyer; Philip N Borer; Liviu Movileanu
Journal:  ACS Nano       Date:  2013-03-05       Impact factor: 15.881

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