Literature DB >> 25990438

Fluorescent protein biosensors applied to microphysiological systems.

Nina Senutovitch1, Lawrence Vernetti2, Robert Boltz1, Richard DeBiasio3, Albert Gough1, D Lansing Taylor1.   

Abstract

This mini-review discusses the evolution of fluorescence as a tool to study living cells and tissues in vitro and the present role of fluorescent protein biosensors (FPBs) in microphysiological systems (MPSs). FPBs allow the measurement of temporal and spatial dynamics of targeted cellular events involved in normal and perturbed cellular assay systems and MPSs in real time. FPBs evolved from fluorescent analog cytochemistry (FAC) that permitted the measurement of the dynamics of purified proteins covalently labeled with environmentally insensitive fluorescent dyes and then incorporated into living cells, as well as a large list of diffusible fluorescent probes engineered to measure environmental changes in living cells. In parallel, a wide range of fluorescence microscopy methods were developed to measure the chemical and molecular activities of the labeled cells, including ratio imaging, fluorescence lifetime, total internal reflection, 3D imaging, including super-resolution, as well as high-content screening. FPBs evolved from FAC by combining environmentally sensitive fluorescent dyes with proteins in order to monitor specific physiological events such as post-translational modifications, production of metabolites, changes in various ion concentrations, and the dynamic interaction of proteins with defined macromolecules in time and space within cells. Original FPBs involved the engineering of fluorescent dyes to sense specific activities when covalently attached to particular domains of the targeted protein. The subsequent development of fluorescent proteins (FPs), such as the green fluorescent protein, dramatically accelerated the adoption of studying living cells, since the genetic "labeling" of proteins became a relatively simple method that permitted the analysis of temporal-spatial dynamics of a wide range of proteins. Investigators subsequently engineered the fluorescence properties of the FPs for environmental sensitivity that, when combined with targeted proteins/peptides, created a new generation of FPBs. Examples of FPBs that are useful in MPS are presented, including the design, testing, and application in a liver MPS.
© 2015 by the Society for Experimental Biology and Medicine.

Entities:  

Keywords:  Microphysiology systems; fluorescence microscopy; fluorescent probes; fluorescent protein biosensors; fluorescent proteins; high-content screening

Mesh:

Substances:

Year:  2015        PMID: 25990438      PMCID: PMC4464952          DOI: 10.1177/1535370215584934

Source DB:  PubMed          Journal:  Exp Biol Med (Maywood)        ISSN: 1535-3699


  123 in total

1.  Design and characterization of a DNA-encoded, voltage-sensitive fluorescent protein.

Authors:  R Sakai; V Repunte-Canonigo; C D Raj; T Knöpfel
Journal:  Eur J Neurosci       Date:  2001-06       Impact factor: 3.386

Review 2.  In vivo application of optogenetics for neural circuit analysis.

Authors:  Xue Han
Journal:  ACS Chem Neurosci       Date:  2012-07-16       Impact factor: 4.418

Review 3.  Quantitative measurement of intracellular protein dynamics using photobleaching or photoactivation of fluorescent proteins.

Authors:  Tomoki Matsuda; Takeharu Nagai
Journal:  Microscopy (Oxf)       Date:  2014-09-28       Impact factor: 1.571

4.  Genetically encoded pH sensor for tracking surface proteins through endocytosis.

Authors:  Anmol Grover; Brigitte F Schmidt; Russell D Salter; Simon C Watkins; Alan S Waggoner; Marcel P Bruchez
Journal:  Angew Chem Int Ed Engl       Date:  2012-03-29       Impact factor: 15.336

Review 5.  Role of immune reactions in drug-induced liver injury (DILI).

Authors:  Cynthia Ju; Timothy Reilly
Journal:  Drug Metab Rev       Date:  2012-01-12       Impact factor: 4.518

6.  pHluorin2: an enhanced, ratiometric, pH-sensitive green florescent protein.

Authors:  Matthew J Mahon
Journal:  Adv Biosci Biotechnol       Date:  2011-06

7.  Photoactivation mechanism of PAmCherry based on crystal structures of the protein in the dark and fluorescent states.

Authors:  Fedor V Subach; Vladimir N Malashkevich; Wendy D Zencheck; Hui Xiao; Grigory S Filonov; Steven C Almo; Vladislav V Verkhusha
Journal:  Proc Natl Acad Sci U S A       Date:  2009-11-23       Impact factor: 11.205

8.  Efficient genome engineering in human pluripotent stem cells using Cas9 from Neisseria meningitidis.

Authors:  Zhonggang Hou; Yan Zhang; Nicholas E Propson; Sara E Howden; Li-Fang Chu; Erik J Sontheimer; James A Thomson
Journal:  Proc Natl Acad Sci U S A       Date:  2013-08-12       Impact factor: 11.205

9.  Multiple-color optical activation, silencing, and desynchronization of neural activity, with single-spike temporal resolution.

Authors:  Xue Han; Edward S Boyden
Journal:  PLoS One       Date:  2007-03-21       Impact factor: 3.240

10.  Practical and reliable FRET/FLIM pair of fluorescent proteins.

Authors:  Dmitry Shcherbo; Ekaterina A Souslova; Joachim Goedhart; Tatyana V Chepurnykh; Anna Gaintzeva; Irina I Shemiakina; Theodorus W J Gadella; Sergey Lukyanov; Dmitriy M Chudakov
Journal:  BMC Biotechnol       Date:  2009-03-25       Impact factor: 2.563

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  16 in total

Review 1.  Liver metastases: Microenvironments and ex-vivo models.

Authors:  Amanda M Clark; Bo Ma; D Lansing Taylor; Linda Griffith; Alan Wells
Journal:  Exp Biol Med (Maywood)       Date:  2016-07-06

2.  Control of oxygen tension recapitulates zone-specific functions in human liver microphysiology systems.

Authors:  Felipe T Lee-Montiel; Subin M George; Albert H Gough; Anup D Sharma; Juanfang Wu; Richard DeBiasio; Lawrence A Vernetti; D Lansing Taylor
Journal:  Exp Biol Med (Maywood)       Date:  2017-04-14

3.  A Tumor Cell-Selective Inhibitor of Mitogen-Activated Protein Kinase Phosphatases Sensitizes Breast Cancer Cells to Lymphokine-Activated Killer Cell Activity.

Authors:  Christof T Kaltenmeier; Laura L Vollmer; Lawrence A Vernetti; Lindsay Caprio; Keanu Davis; Vasiliy N Korotchenko; Billy W Day; Michael Tsang; Keren I Hulkower; Michael T Lotze; Andreas Vogt
Journal:  J Pharmacol Exp Ther       Date:  2017-02-02       Impact factor: 4.030

4.  A glass-based, continuously zonated and vascularized human liver acinus microphysiological system (vLAMPS) designed for experimental modeling of diseases and ADME/TOX.

Authors:  Xiang Li; Subin M George; Lawrence Vernetti; Albert H Gough; D Lansing Taylor
Journal:  Lab Chip       Date:  2018-08-21       Impact factor: 6.799

5.  Harnessing Human Microphysiology Systems as Key Experimental Models for Quantitative Systems Pharmacology.

Authors:  D Lansing Taylor; Albert Gough; Mark E Schurdak; Lawrence Vernetti; Chakra S Chennubhotla; Daniel Lefever; Fen Pei; James R Faeder; Timothy R Lezon; Andrew M Stern; Ivet Bahar
Journal:  Handb Exp Pharmacol       Date:  2019

Review 6.  Liver 'organ on a chip'.

Authors:  Colin H Beckwitt; Amanda M Clark; Sarah Wheeler; D Lansing Taylor; Donna B Stolz; Linda Griffith; Alan Wells
Journal:  Exp Cell Res       Date:  2017-12-29       Impact factor: 3.905

7.  The Microphysiology Systems Database for Analyzing and Modeling Compound Interactions with Human and Animal Organ Models.

Authors:  Albert Gough; Lawrence Vernetti; Luke Bergenthal; Tong Ying Shun; D Lansing Taylor
Journal:  Appl In Vitro Toxicol       Date:  2016-06-01

8.  Fitting tissue chips and microphysiological systems into the grand scheme of medicine, biology, pharmacology, and toxicology.

Authors:  David E Watson; Rosemarie Hunziker; John P Wikswo
Journal:  Exp Biol Med (Maywood)       Date:  2017-10

Review 9.  Pre-clinical and clinical investigations of metabolic zonation in liver diseases: The potential of microphysiology systems.

Authors:  Alejandro Soto-Gutierrez; Albert Gough; Lawrence A Vernetti; D L Taylor; Satdarshan P Monga
Journal:  Exp Biol Med (Maywood)       Date:  2017-05-03

10.  Proteomic Screening and Lasso Regression Reveal Differential Signaling in Insulin and Insulin-like Growth Factor I (IGF1) Pathways.

Authors:  Cemal Erdem; Alison M Nagle; Angelo J Casa; Beate C Litzenburger; Yu-Fen Wang; D Lansing Taylor; Adrian V Lee; Timothy R Lezon
Journal:  Mol Cell Proteomics       Date:  2016-06-30       Impact factor: 5.911

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