Literature DB >> 2598934

Control-pattern analysis of metabolic pathways. Flux and concentration control in linear pathways.

J H Hofmeyr1.   

Abstract

Metabolic control analysis [Kacser and Burns (1973) Symp. Soc. Exp. Biol. 27, 65-104; Heinrich and Rapoport (1974) Eur. J. Biochem. 42, 89-95] leads to a description of the systemic properties of a metabolic system (expressed as control coefficients) in terms of the local kinetic properties of the individual enzyme-catalyzed reactions (expressed as elasticity coefficients). This paper describes a non-algebraic diagrammatic method which generates the mathematical expressions for flux or concentration-control coefficients in terms of elasticity coefficients. According to a set of simple rules, 'flux-control patterns' or 'concentration-control patterns' are drawn on a metabolic diagram. Each control pattern represents a product of elasticity coefficients that occurs as a term in the expression for a control coefficient. The rules also generate the correct sign that precedes each term. The control patterns are then used to build the expressions for control coefficients. The procedure was developed in such a way that each control pattern can be understood in terms of a 'chain of local effects' which shows how a perturbation in the activity of an enzyme is propagated through the metabolic pathway.

Entities:  

Mesh:

Substances:

Year:  1989        PMID: 2598934     DOI: 10.1111/j.1432-1033.1989.tb15215.x

Source DB:  PubMed          Journal:  Eur J Biochem        ISSN: 0014-2956


  10 in total

Review 1.  Metabolic control analysis: a survey of its theoretical and experimental development.

Authors:  D A Fell
Journal:  Biochem J       Date:  1992-09-01       Impact factor: 3.857

2.  Application of electrical analogues for control analysis of simple metabolic pathways.

Authors:  A K Sen
Journal:  Biochem J       Date:  1990-11-15       Impact factor: 3.857

3.  Quantitative analysis of metabolic regulation. A graph-theoretic approach using spanning trees.

Authors:  A K Sen
Journal:  Biochem J       Date:  1991-04-01       Impact factor: 3.857

4.  Calculation of control coefficients of metabolic pathways. A flux-oriented graph-theoretic approach.

Authors:  A K Sen
Journal:  Biochem J       Date:  1991-10-01       Impact factor: 3.857

5.  Algorithms for the derivation of Flux and Concentration Control Coefficients.

Authors:  A R Schulz
Journal:  Biochem J       Date:  1991-08-15       Impact factor: 3.857

6.  Metabolic control analysis. An application of signal flow graphs.

Authors:  A K Sen
Journal:  Biochem J       Date:  1990-07-01       Impact factor: 3.857

Review 7.  Control and regulation of pathways via negative feedback.

Authors:  Herbert M Sauro
Journal:  J R Soc Interface       Date:  2017-02       Impact factor: 4.118

8.  A computer program for the algebraic determination of control coefficients in Metabolic Control Analysis.

Authors:  S Thomas; D A Fell
Journal:  Biochem J       Date:  1993-06-01       Impact factor: 3.857

9.  Tracing regulatory routes in metabolism using generalised supply-demand analysis.

Authors:  Carl D Christensen; Jan-Hendrik S Hofmeyr; Johann M Rohwer
Journal:  BMC Syst Biol       Date:  2015-12-03

10.  Delving deeper: Relating the behaviour of a metabolic system to the properties of its components using symbolic metabolic control analysis.

Authors:  Carl D Christensen; Jan-Hendrik S Hofmeyr; Johann M Rohwer
Journal:  PLoS One       Date:  2018-11-28       Impact factor: 3.240

  10 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.