Literature DB >> 1883339

Algorithms for the derivation of Flux and Concentration Control Coefficients.

A R Schulz1.   

Abstract

A computer program is described that derives the Flux and Concentration Control Coefficients for linear and branched metabolic pathways. The program prompts the user to enter a concise description of the metabolic pathway. From this description, the program constructs the appropriate equations in matrix form. The algorithm employed to obtain the symbolic determinants is described, and this algorithm also provides a convenient method for manual derivation of the Control Coefficients. The computer-based method will accommodate unlimited feed-forward and feed-backward loops and a maximum of two branches from each metabolite on the main pathway. The utility of the method is illustrated with a linear path with feed-forward and feed-backward loops, and with a substrate cycle as an example of a path with two branches.

Mesh:

Year:  1991        PMID: 1883339      PMCID: PMC1151482          DOI: 10.1042/bj2780299

Source DB:  PubMed          Journal:  Biochem J        ISSN: 0264-6021            Impact factor:   3.857


  15 in total

Review 1.  Use of implicit methods from general sensitivity theory to develop a systematic approach to metabolic control. II. Complex systems.

Authors:  M Cascante; R Franco; E I Canela
Journal:  Math Biosci       Date:  1989-06       Impact factor: 2.144

Review 2.  A comparison of variant theories of intact biochemical systems. I. Enzyme-enzyme interactions and biochemical systems theory.

Authors:  A Sorribas; M A Savageau
Journal:  Math Biosci       Date:  1989-06       Impact factor: 2.144

3.  Control-pattern analysis of metabolic pathways. Flux and concentration control in linear pathways.

Authors:  J H Hofmeyr
Journal:  Eur J Biochem       Date:  1989-12-08

4.  A simple matrix method for determining flux control coefficients in complex pathways.

Authors:  J Barrett
Journal:  Biochim Biophys Acta       Date:  1989-09-15

5.  The control of cell metabolism for homogeneous vs. heterogeneous enzyme systems.

Authors:  G R Welch; T Keleti; B Vértessy
Journal:  J Theor Biol       Date:  1988-02-21       Impact factor: 2.691

6.  Steady-state modelling of metabolic pathways: a guide for the prospective simulator.

Authors:  J H Hofmeyr
Journal:  Comput Appl Biosci       Date:  1986-04

7.  Metabolic control theory: a structural approach.

Authors:  C Reder
Journal:  J Theor Biol       Date:  1988-11-21       Impact factor: 2.691

8.  Metabolic control analysis of moiety-conserved cycles.

Authors:  J H Hofmeyr; H Kacser; K J van der Merwe
Journal:  Eur J Biochem       Date:  1986-03-17

9.  Metabolic control and its analysis. Additional relationships between elasticities and control coefficients.

Authors:  D A Fell; H M Sauro
Journal:  Eur J Biochem       Date:  1985-05-02

10.  The control of flux.

Authors:  H Kacser; J A Burns
Journal:  Symp Soc Exp Biol       Date:  1973
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  2 in total

Review 1.  Metabolic control analysis: a survey of its theoretical and experimental development.

Authors:  D A Fell
Journal:  Biochem J       Date:  1992-09-01       Impact factor: 3.857

2.  A computer program for the algebraic determination of control coefficients in Metabolic Control Analysis.

Authors:  S Thomas; D A Fell
Journal:  Biochem J       Date:  1993-06-01       Impact factor: 3.857

  2 in total

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