Literature DB >> 25989018

Improving patient prostate cancer risk assessment: Moving from static, globally-applied to dynamic, practice-specific risk calculators.

Andreas N Strobl1, Andrew J Vickers2, Ben Van Calster3, Ewout Steyerberg4, Robin J Leach5, Ian M Thompson6, Donna P Ankerst7.   

Abstract

Clinical risk calculators are now widely available but have generally been implemented in a static and one-size-fits-all fashion. The objective of this study was to challenge these notions and show via a case study concerning risk-based screening for prostate cancer how calculators can be dynamically and locally tailored to improve on-site patient accuracy. Yearly data from five international prostate biopsy cohorts (3 in the US, 1 in Austria, 1 in England) were used to compare 6 methods for annual risk prediction: static use of the online US-developed Prostate Cancer Prevention Trial Risk Calculator (PCPTRC); recalibration of the PCPTRC; revision of the PCPTRC; building a new model each year using logistic regression, Bayesian prior-to-posterior updating, or random forests. All methods performed similarly with respect to discrimination, except for random forests, which were worse. All methods except for random forests greatly improved calibration over the static PCPTRC in all cohorts except for Austria, where the PCPTRC had the best calibration followed closely by recalibration. The case study shows that a simple annual recalibration of a general online risk tool for prostate cancer can improve its accuracy with respect to the local patient practice at hand.
Copyright © 2015 Elsevier Inc. All rights reserved.

Entities:  

Keywords:  Calibration; Discrimination; Logistic regression; Prediction; Prostate cancer; Revision

Mesh:

Substances:

Year:  2015        PMID: 25989018      PMCID: PMC4532612          DOI: 10.1016/j.jbi.2015.05.001

Source DB:  PubMed          Journal:  J Biomed Inform        ISSN: 1532-0464            Impact factor:   6.317


  40 in total

1.  Assessing prostate cancer risk: results from the Prostate Cancer Prevention Trial.

Authors:  Ian M Thompson; Donna Pauler Ankerst; Chen Chi; Phyllis J Goodman; Catherine M Tangen; M Scott Lucia; Ziding Feng; Howard L Parnes; Charles A Coltman
Journal:  J Natl Cancer Inst       Date:  2006-04-19       Impact factor: 13.506

2.  A new framework to enhance the interpretation of external validation studies of clinical prediction models.

Authors:  Thomas P A Debray; Yvonne Vergouwe; Hendrik Koffijberg; Daan Nieboer; Ewout W Steyerberg; Karel G M Moons
Journal:  J Clin Epidemiol       Date:  2014-08-30       Impact factor: 6.437

3.  A study in transfer learning: leveraging data from multiple hospitals to enhance hospital-specific predictions.

Authors:  Jenna Wiens; John Guttag; Eric Horvitz
Journal:  J Am Med Inform Assoc       Date:  2014-01-30       Impact factor: 4.497

4.  Towards better clinical prediction models: seven steps for development and an ABCD for validation.

Authors:  Ewout W Steyerberg; Yvonne Vergouwe
Journal:  Eur Heart J       Date:  2014-06-04       Impact factor: 29.983

5.  Prediction of coronary heart disease using risk factor categories.

Authors:  P W Wilson; R B D'Agostino; D Levy; A M Belanger; H Silbershatz; W B Kannel
Journal:  Circulation       Date:  1998-05-12       Impact factor: 29.690

6.  Projecting individualized probabilities of developing breast cancer for white females who are being examined annually.

Authors:  M H Gail; L A Brinton; D P Byar; D K Corle; S B Green; C Schairer; J J Mulvihill
Journal:  J Natl Cancer Inst       Date:  1989-12-20       Impact factor: 13.506

7.  Updating risk prediction tools: a case study in prostate cancer.

Authors:  Donna P Ankerst; Tim Koniarski; Yuanyuan Liang; Robin J Leach; Ziding Feng; Martin G Sanda; Alan W Partin; Daniel W Chan; Jacob Kagan; Lori Sokoll; John T Wei; Ian M Thompson
Journal:  Biom J       Date:  2011-11-17       Impact factor: 2.207

8.  A spline-based tool to assess and visualize the calibration of multiclass risk predictions.

Authors:  K Van Hoorde; S Van Huffel; D Timmerman; T Bourne; B Van Calster
Journal:  J Biomed Inform       Date:  2015-01-09       Impact factor: 6.317

9.  The influence of finasteride on the development of prostate cancer.

Authors:  Ian M Thompson; Phyllis J Goodman; Catherine M Tangen; M Scott Lucia; Gary J Miller; Leslie G Ford; Michael M Lieber; R Duane Cespedes; James N Atkins; Scott M Lippman; Susie M Carlin; Anne Ryan; Connie M Szczepanek; John J Crowley; Charles A Coltman
Journal:  N Engl J Med       Date:  2003-06-24       Impact factor: 91.245

10.  Prevalence of prostate cancer among men with a prostate-specific antigen level < or =4.0 ng per milliliter.

Authors:  Ian M Thompson; Donna K Pauler; Phyllis J Goodman; Catherine M Tangen; M Scott Lucia; Howard L Parnes; Lori M Minasian; Leslie G Ford; Scott M Lippman; E David Crawford; John J Crowley; Charles A Coltman
Journal:  N Engl J Med       Date:  2004-05-27       Impact factor: 91.245

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  11 in total

1.  Bayesian logistic regression for online recalibration and revision of risk prediction models with performance guarantees.

Authors:  Jean Feng; Alexej Gossmann; Berkman Sahiner; Romain Pirracchio
Journal:  J Am Med Inform Assoc       Date:  2022-04-13       Impact factor: 4.497

2.  Systematic Review of Approaches to Preserve Machine Learning Performance in the Presence of Temporal Dataset Shift in Clinical Medicine.

Authors:  Lin Lawrence Guo; Stephen R Pfohl; Jason Fries; Jose Posada; Scott Lanyon Fleming; Catherine Aftandilian; Nigam Shah; Lillian Sung
Journal:  Appl Clin Inform       Date:  2021-09-01       Impact factor: 2.762

3.  External Validation of the Prostate Biopsy Collaborative Group Risk Calculator and the Rotterdam Prostate Cancer Risk Calculator in a Swedish Population-based Screening Cohort.

Authors:  Jan Chandra Engel; Thorgerdur Palsdottir; Donna Ankerst; Sebastiaan Remmers; Ashkan Mortezavi; Venkatesh Chellappa; Lars Egevad; Henrik Grönberg; Martin Eklund; Tobias Nordström
Journal:  Eur Urol Open Sci       Date:  2022-05-19

Review 4.  Clinical artificial intelligence quality improvement: towards continual monitoring and updating of AI algorithms in healthcare.

Authors:  Jean Feng; Rachael V Phillips; Ivana Malenica; Andrew Bishara; Alan E Hubbard; Leo A Celi; Romain Pirracchio
Journal:  NPJ Digit Med       Date:  2022-05-31

5.  External Evaluation of a Novel Prostate Cancer Risk Calculator (ProstateCheck) Based on Data from the Swiss Arm of the ERSPC.

Authors:  Cédric Poyet; Marian S Wettstein; Dara J Lundon; Bimal Bhindi; Girish S Kulkarni; Karim Saba; Tullio Sulser; A J Vickers; Thomas Hermanns
Journal:  J Urol       Date:  2016-05-14       Impact factor: 7.450

6.  Systematic review of prediction models for delirium in the older adult inpatient.

Authors:  Heidi Lindroth; Lisa Bratzke; Suzanne Purvis; Roger Brown; Mark Coburn; Marko Mrkobrada; Matthew T V Chan; Daniel H J Davis; Pratik Pandharipande; Cynthia M Carlsson; Robert D Sanders
Journal:  BMJ Open       Date:  2018-04-28       Impact factor: 2.692

7.  Liquid Biopsy Potential Biomarkers in Prostate Cancer.

Authors:  Jochen Neuhaus; Bo Yang
Journal:  Diagnostics (Basel)       Date:  2018-09-21

8.  Validation and updating of risk models based on multinomial logistic regression.

Authors:  Ben Van Calster; Kirsten Van Hoorde; Yvonne Vergouwe; Shabnam Bobdiwala; George Condous; Emma Kirk; Tom Bourne; Ewout W Steyerberg
Journal:  Diagn Progn Res       Date:  2017-02-08

9.  Risk-prediction tools in prostate cancer: the challenge of tailoring.

Authors:  Alessandro Morlacco; Jiahua Pan; R Jeffrey Karnes
Journal:  Asian J Androl       Date:  2016 Nov-Dec       Impact factor: 3.285

10.  Developing risk models for multicenter data using standard logistic regression produced suboptimal predictions: A simulation study.

Authors:  Nora Falconieri; Ben Van Calster; Dirk Timmerman; Laure Wynants
Journal:  Biom J       Date:  2020-01-20       Impact factor: 2.207

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