| Literature DB >> 25961003 |
Yingrong Chen1, Zhihong Ma1, Lishan Min1, Hongwei Li2, Bin Wang3, Jing Zhong1, Licheng Dai4.
Abstract
Lung cancer is one of the most common causes of cancer death, for which no validated tumor biomarker is sufficiently accurate to be useful for diagnosis. Additionally, the metabolic alterations associated with the disease are unclear. In this study, we investigated the construction, interaction, and pathways of potential lung cancer biomarkers using metabolomics pathway analysis based on the Kyoto Encyclopedia of Genes and Genomes database and the Human Metabolome Database to identify the top altered pathways for analysis and visualization. We constructed a diagnostic model using potential serum biomarkers from patients with lung cancer. We assessed their specificity and sensitivity according to the area under the curve of the receiver operator characteristic (ROC) curves, which could be used to distinguish patients with lung cancer from normal subjects. The pathway analysis indicated that sphingolipid metabolism was the top altered pathway in lung cancer. ROC curve analysis indicated that glycerophospho-N-arachidonoyl ethanolamine (GpAEA) and sphingosine were potential sensitive and specific biomarkers for lung cancer diagnosis and prognosis. Compared with the traditional lung cancer diagnostic biomarkers carcinoembryonic antigen and cytokeratin 19 fragment, GpAEA and sphingosine were as good or more appropriate for detecting lung cancer. We report our identification of potential metabolic diagnostic and prognostic biomarkers of lung cancer and clarify the metabolic alterations in lung cancer.Entities:
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Year: 2015 PMID: 25961003 PMCID: PMC4415745 DOI: 10.1155/2015/183624
Source DB: PubMed Journal: Biomed Res Int Impact factor: 3.411
LC-Q-TOF/MS identification of potential serum biomarkers in lung cancer.
| Number | Retention time (min) |
| Metabolites | Relative mass intensity | ||
|---|---|---|---|---|---|---|
| Control group | Preoperative lung cancer group (PRLC) | Postoperative lung cancer group (POLC) | ||||
| 1 | 9.47 | 368.1655 | Prasterone sulfate | 106.80 ± 31.70 | 71.99 ± 38.72* | 50.93 ± 22.26* |
| 2 | 11.89 | 299.2816 | Sphingosine | 139.60 ± 38.75 | 53.33 ± 35.95∗# | 141.78 ± 42.42 |
| 3 | 12.17 | 169.0481 | Phosphorylcholine | 72.70 ± 14.16 | 133.28 ± 75.49∗# | 82.17 ± 28.31 |
| 4 | 13.06 | 501.2862 | Glycerophospho-N-arachidonoyl ethanolamine | 1355.53 ± 282.89 | 2722.76 ± 769.63∗# | 1714.79 ± 399.47 |
| 5 | 16.06 | 278.2241 |
| 500.34 ± 204.80 | 1245.99 ± 595.41∗# | 602.06 ± 226.28 |
*Compared with control group, p < 0.05; #compared with postoperative lung cancer group, p < 0.05.
GC/MS identification of potential serum biomarkers in lung cancer.
| Number | Retention time (min) |
| Metabolites | Relative mass intensity | ||
|---|---|---|---|---|---|---|
| Control group | Preoperative lung cancer group (PRLC) | Postoperative lung cancer group (POLC) | ||||
| 1 | 9.21 | 131.1089 |
| 306.84 ± 153.64 | 556.54 ± 220.00* | 803.58 ± 329.41* |
| 2 | 12.23 | 132.1187 | Serine | 183.48 ± 96.63 | 114.92 ± 89.30∗# | 284.16 ± 184.76 |
| 3 | 18.99 | 292.2003 | 2,3,4-Trihydroxybutyric acid | 71.89 ± 30.60 | 24.63 ± 24.13* | 23.02 ± 14.47* |
| 4 | 30.27 | 122.1582 | 9,12-Octadecadienoic acid | 9.88 ± 5.79 | 24.90 ± 18.09∗# | 13.57 ± 9.30 |
| 5 | 30.38 | 117.0664 | Oleic acid | 244.99 ± 131.32 | 605.66 ± 361.44∗# | 346.58 ± 164.66 |
*Compared with control group, p < 0.05; #compared with postoperative lung cancer group, p < 0.05.
Clinical characteristics of subjects at baseline.
| Samples | Control group | Preoperative lung cancer group (PRLC) | Postoperative lung cancer group (POLC) |
|---|---|---|---|
| Sample number | 30 | 30 | 30 |
| Age | 60.35 ± 12.48 | 61.58 ± 10.67 | 61.58 ± 10.67 |
| Sex (F/M) | 19/11 | 21/9 | 21/9 |
| CEA (ng/mL) | 1.66 ± 0.72 | 3.29 ± 1.60∗# | 2.24 ± 1.42 |
| CYFRA21-1 (ng/mL) | 1.30 ± 0.46 | 3.37 ± 2.66∗# | 1.53 ± 0.72 |
*Compared with control group, p < 0.05; #compared with postoperative lung cancer group, p < 0.05.
Figure 1Summary of pathway analysis.
Pathway analysis results.
| Total | Expected | Hits | Raw | FDR | Impact | |
|---|---|---|---|---|---|---|
| Sphingolipid metabolism | 25 | 0.74 | 3 | 0.036 | 0.47 | 0.66 |
| Glycine, serine, and threonine metabolism | 48 | 1.42 | 3 | 0.17 | 0.78 | 0.42 |
| Arginine and proline metabolism | 77 | 2.27 | 5 | 0.074 | 0.66 | 0.27 |
| Galactose metabolism | 41 | 1.21 | 4 | 0.031 | 0.47 | 0.26 |
| Linoleic acid metabolism | 15 | 0.44 | 3 | 0.36 | 1.00 | 0.23 |
Figure 2System analysis of metabolomic alterations in lung cancer. The KEGG database was searched for each disrupted metabolite detected; each KEGG pathway was scored according to the pathway impact. The map was generated using the KEGG reference map. Green boxes indicate enzymatic activities with putative analogous cases in humans.
Figure 3ROC curve analysis of potential serum biomarker and other tumor marker (CEA, CYFRA21-1) levels for differentiating the control group from the PRLC group (high levels of biomarkers in PRLC).
Figure 4ROC curve analysis of potential serum biomarker and other tumor marker (CEA, CYFRA21-1) levels for differentiating the control group from the PRLC group (low levels of biomarkers in PRLC).
ROC curves of potential serum biomarker levels for differentiating the control group from the PRLC group.
| Marker | Cutoff value | Sensitivity (%) | Specificity (%) | AUC |
| 95% CIa |
|---|---|---|---|---|---|---|
| Phosphorylcholine | 78.32 | 90.00 | 80.00 | 0.874 | <0.001 | 0.780–0.969 |
| Glycerophospho-N-arachidonoyl ethanolamine | 1752.60 | 96.67 | 90.00 | 0.983 | <0.001 | 0.960–1.007 |
|
| 805.17 | 76.67 | 93.33 | 0.889 | <0.001 | 0.806–0.972 |
|
| 365.23 | 80.00 | 80.00 | 0.860 | <0.001 | 0.764–0.956 |
| 9,12-Octadecadienoic acid | 13.56 | 66.67 | 83.33 | 0.704 | <0.001 | 0.562–0.847 |
| Oleic acid | 402.22 | 70.00 | 86.67 | 0.749 | <0.001 | 0.614–0.884 |
| CEA | 2.54 | 76.67 | 93.33 | 0.867 | <0.001 | 0.765–0.969 |
| CYFRA21-1 | 2.02 | 56.67 | 96.67 | 0.803 | <0.001 | 0.690–0.916 |
*Asymptotic significance, null hypothesis: true area = 0.5.
a95% confidence interval of the difference.
ROC curves of potential serum biomarker levels for differentiating the control group from the PRLC group.
| Marker | Cutoff value | Sensitivity (%) | Specificity (%) | AUC |
| 95% CIa |
|---|---|---|---|---|---|---|
| Prasterone sulfate | 91.07 | 76.67 | 80.00 | 0.787 | <0.001 | 0.670–0.905 |
| Sphingosine | 102.76 | 90.00 | 96.67 | 0.957 | <0.001 | 0.894–1.019 |
| Serine | 113.21 | 83.33 | 73.33 | 0.774 | <0.001 | 0.645–0.904 |
| 2,3,4-Trihydroxybutyric acid | 45.87 | 86.67 | 83.33 | 0.880 | <0.001 | 0.794–0.966 |
*Asymptotic significance, null hypothesis: true area = 0.5.
a95% confidence interval of the difference.
Figure 5ROC curve analysis of potential serum biomarker levels for differentiating the POLC group from the PRLC group (high levels of biomarkers in PRLC).
Figure 6ROC curve analysis of potential serum biomarker levels for differentiating the POLC group from the PRLC group (low levels of biomarkers in PRLC).
ROC curves of potential serum biomarker levels for differentiating the POLC group from the PRLC group.
| Marker | Cutoff value | Sensitivity (%) | Specificity (%) | AUC |
| 95% CIa |
|---|---|---|---|---|---|---|
| Phosphorylcholine | 84.69 | 76.67 | 70.00 | 0.781 | <0.001 | 0.666–0.896 |
| Glycerophospho-N-arachidonoyl ethanolamine | 1988.46 | 76.67 | 93.33 | 0.916 | <0.001 | 0.847–0.984 |
|
| 808.24 | 76.67 | 90.00 | 0.847 | <0.001 | 0.744–0.949 |
| 9,12-Octadecadienoic acid | 21.29 | 53.33 | 86.67 | 0.645 | <0.001 | 0.499–0.791 |
| Oleic acid | 489.02 | 60.00 | 80.00 | 0.694 | <0.001 | 0.550–0.838 |
| CEA | 2.90 | 70.00 | 83.33 | 0.772 | <0.001 | 0.646–0.898 |
| CYFRA21-1 | 1.64 | 70.00 | 70.00 | 0.737 | <0.001 | 0.646–0.863 |
*Asymptotic significance, null hypothesis: true area = 0.5.
a95% confidence interval of the difference.
ROC curves of potential serum biomarker levels for differentiating the POLC group from the PRLC group.
| Marker | Cutoff value | Sensitivity (%) | Specificity (%) | AUC |
| 95% CIa |
|---|---|---|---|---|---|---|
| Sphingosine | 86.48 | 96.67 | 90.00 | 0.966 | <0.001 | 0.911 |
| Serine | 130.97 | 80.00 | 76.67 | 0.825 | <0.001 | 0.721 |
*Asymptotic significance, null hypothesis: true area = 0.5.
a95% confidence interval of the difference.