Literature DB >> 25921072

The dynamics of eukaryotic replication initiation: origin specificity, licensing, and firing at the single-molecule level.

Daniel Duzdevich1, Megan D Warner2, Simina Ticau2, Nikola A Ivica2, Stephen P Bell3, Eric C Greene4.   

Abstract

Eukaryotic replication initiation is highly regulated and dynamic. It begins with the origin recognition complex (ORC) binding DNA sites called origins of replication. ORC, together with Cdc6 and Cdt1, mediate pre-replicative complex (pre-RC) assembly by loading a double hexamer of Mcm2-7: the core of the replicative helicase. Here, we use single-molecule imaging to directly visualize Saccharomyces cerevisiae pre-RC assembly and replisome firing in real time. We show that ORC can locate and stably bind origins within large tracts of non-origin DNA and that Cdc6 drives ordered pre-RC assembly. We further show that the dynamics of the ORC-Cdc6 interaction dictate Mcm2-7 loading specificity and that Mcm2-7 double hexamers form preferentially at a native origin sequence. Finally, we demonstrate that single Mcm2-7 hexamers propagate bidirectionally, monotonically, and processively as constituents of active replisomes.
Copyright © 2015 Elsevier Inc. All rights reserved.

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Year:  2015        PMID: 25921072      PMCID: PMC4427541          DOI: 10.1016/j.molcel.2015.03.017

Source DB:  PubMed          Journal:  Mol Cell        ISSN: 1097-2765            Impact factor:   17.970


  43 in total

Review 1.  DnaA and ORC: more than DNA replication initiators.

Authors:  Graham Scholefield; Jan-Willem Veening; Heath Murray
Journal:  Trends Cell Biol       Date:  2010-12-01       Impact factor: 20.808

2.  Eukaryotic origin-dependent DNA replication in vitro reveals sequential action of DDK and S-CDK kinases.

Authors:  Ryan C Heller; Sukhyun Kang; Wendy M Lam; Shuyan Chen; Clara S Chan; Stephen P Bell
Journal:  Cell       Date:  2011-07-08       Impact factor: 41.582

3.  Fiji: an open-source platform for biological-image analysis.

Authors:  Johannes Schindelin; Ignacio Arganda-Carreras; Erwin Frise; Verena Kaynig; Mark Longair; Tobias Pietzsch; Stephan Preibisch; Curtis Rueden; Stephan Saalfeld; Benjamin Schmid; Jean-Yves Tinevez; Daniel James White; Volker Hartenstein; Kevin Eliceiri; Pavel Tomancak; Albert Cardona
Journal:  Nat Methods       Date:  2012-06-28       Impact factor: 28.547

4.  Selective bypass of a lagging strand roadblock by the eukaryotic replicative DNA helicase.

Authors:  Yu V Fu; Hasan Yardimci; David T Long; The Vinh Ho; Angelo Guainazzi; Vladimir P Bermudez; Jerard Hurwitz; Antoine van Oijen; Orlando D Schärer; Johannes C Walter
Journal:  Cell       Date:  2011-09-16       Impact factor: 41.582

5.  DNA curtains for high-throughput single-molecule optical imaging.

Authors:  Eric C Greene; Shalom Wind; Teresa Fazio; Jason Gorman; Mari-Liis Visnapuu
Journal:  Methods Enzymol       Date:  2010       Impact factor: 1.600

6.  Uncoupling of sister replisomes during eukaryotic DNA replication.

Authors:  Hasan Yardimci; Anna B Loveland; Satoshi Habuchi; Antoine M van Oijen; Johannes C Walter
Journal:  Mol Cell       Date:  2010-12-10       Impact factor: 17.970

7.  Activation of the MCM2-7 helicase by association with Cdc45 and GINS proteins.

Authors:  Ivar Ilves; Tatjana Petojevic; James J Pesavento; Michael R Botchan
Journal:  Mol Cell       Date:  2010-01-29       Impact factor: 17.970

Review 8.  The origin recognition complex: a biochemical and structural view.

Authors:  Huilin Li; Bruce Stillman
Journal:  Subcell Biochem       Date:  2012

9.  OriDB, the DNA replication origin database updated and extended.

Authors:  Cheuk C Siow; Sian R Nieduszynska; Carolin A Müller; Conrad A Nieduszynski
Journal:  Nucleic Acids Res       Date:  2011-11-24       Impact factor: 16.971

10.  Nanofabricated racks of aligned and anchored DNA substrates for single-molecule imaging.

Authors:  Jason Gorman; Teresa Fazio; Feng Wang; Shalom Wind; Eric C Greene
Journal:  Langmuir       Date:  2010-01-19       Impact factor: 3.882

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  41 in total

Review 1.  Mechanisms and regulation of DNA replication initiation in eukaryotes.

Authors:  Matthew W Parker; Michael R Botchan; James M Berger
Journal:  Crit Rev Biochem Mol Biol       Date:  2017-01-17       Impact factor: 8.250

Review 2.  Guidelines for DNA recombination and repair studies: Mechanistic assays of DNA repair processes.

Authors:  Hannah L Klein; Kenny K H Ang; Michelle R Arkin; Emily C Beckwitt; Yi-Hsuan Chang; Jun Fan; Youngho Kwon; Michael J Morten; Sucheta Mukherjee; Oliver J Pambos; Hafez El Sayyed; Elizabeth S Thrall; João P Vieira-da-Rocha; Quan Wang; Shuang Wang; Hsin-Yi Yeh; Julie S Biteen; Peter Chi; Wolf-Dietrich Heyer; Achillefs N Kapanidis; Joseph J Loparo; Terence R Strick; Patrick Sung; Bennett Van Houten; Hengyao Niu; Eli Rothenberg
Journal:  Microb Cell       Date:  2019-01-07

3.  Visualizing the Interaction Between the Qdot-labeled Protein and Site-specifically Modified λ DNA at the Single Molecule Level.

Authors:  Huijun Xue; Zhengyan Zhan; Kaining Zhang; Yu Vincent Fu
Journal:  J Vis Exp       Date:  2018-07-17       Impact factor: 1.355

4.  Single-Stranded DNA Curtains for Studying Homologous Recombination.

Authors:  C J Ma; J B Steinfeld; E C Greene
Journal:  Methods Enzymol       Date:  2016-10-22       Impact factor: 1.600

5.  Checkpoint-Independent Regulation of Origin Firing by Mrc1 through Interaction with Hsk1 Kinase.

Authors:  Seiji Matsumoto; Yutaka Kanoh; Michie Shimmoto; Motoshi Hayano; Kyosuke Ueda; Rino Fukatsu; Naoko Kakusho; Hisao Masai
Journal:  Mol Cell Biol       Date:  2017-03-17       Impact factor: 4.272

6.  A new class of disordered elements controls DNA replication through initiator self-assembly.

Authors:  Matthew W Parker; Maren Bell; Mustafa Mir; Jonchee A Kao; Xavier Darzacq; Michael R Botchan; James M Berger
Journal:  Elife       Date:  2019-09-27       Impact factor: 8.140

Review 7.  Cryo-EM of dynamic protein complexes in eukaryotic DNA replication.

Authors:  Jingchuan Sun; Zuanning Yuan; Lin Bai; Huilin Li
Journal:  Protein Sci       Date:  2016-09-14       Impact factor: 6.725

Review 8.  Time for remodeling: SNF2-family DNA translocases in replication fork metabolism and human disease.

Authors:  Sarah A Joseph; Angelo Taglialatela; Giuseppe Leuzzi; Jen-Wei Huang; Raquel Cuella-Martin; Alberto Ciccia
Journal:  DNA Repair (Amst)       Date:  2020-08-15

Review 9.  Understanding nucleosome dynamics and their links to gene expression and DNA replication.

Authors:  William K M Lai; B Franklin Pugh
Journal:  Nat Rev Mol Cell Biol       Date:  2017-05-24       Impact factor: 94.444

10.  Single-molecule studies of origin licensing reveal mechanisms ensuring bidirectional helicase loading.

Authors:  Simina Ticau; Larry J Friedman; Nikola A Ivica; Jeff Gelles; Stephen P Bell
Journal:  Cell       Date:  2015-04-16       Impact factor: 41.582

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