Literature DB >> 25901680

Structure of the human 80S ribosome.

Heena Khatter1, Alexander G Myasnikov1, S Kundhavai Natchiar1, Bruno P Klaholz1.   

Abstract

Ribosomes are translational machineries that catalyse protein synthesis. Ribosome structures from various species are known at the atomic level, but obtaining the structure of the human ribosome has remained a challenge; efforts to address this would be highly relevant with regard to human diseases. Here we report the near-atomic structure of the human ribosome derived from high-resolution single-particle cryo-electron microscopy and atomic model building. The structure has an average resolution of 3.6 Å, reaching 2.9 Å resolution in the most stable regions. It provides unprecedented insights into ribosomal RNA entities and amino acid side chains, notably of the transfer RNA binding sites and specific molecular interactions with the exit site tRNA. It reveals atomic details of the subunit interface, which is seen to remodel strongly upon rotational movements of the ribosomal subunits. Furthermore, the structure paves the way for analysing antibiotic side effects and diseases associated with deregulated protein synthesis.

Entities:  

Mesh:

Substances:

Year:  2015        PMID: 25901680     DOI: 10.1038/nature14427

Source DB:  PubMed          Journal:  Nature        ISSN: 0028-0836            Impact factor:   49.962


  58 in total

1.  EMAN: semiautomated software for high-resolution single-particle reconstructions.

Authors:  S J Ludtke; P R Baldwin; W Chiu
Journal:  J Struct Biol       Date:  1999-12-01       Impact factor: 2.867

2.  Optimal determination of particle orientation, absolute hand, and contrast loss in single-particle electron cryomicroscopy.

Authors:  Peter B Rosenthal; Richard Henderson
Journal:  J Mol Biol       Date:  2003-10-31       Impact factor: 5.469

3.  Accurate determination of local defocus and specimen tilt in electron microscopy.

Authors:  Joseph A Mindell; Nikolaus Grigorieff
Journal:  J Struct Biol       Date:  2003-06       Impact factor: 2.867

4.  NMR detection of bifurcated hydrogen bonds in large proteins.

Authors:  Aizhuo Liu; Zhenwei Lu; Jifeng Wang; Lishan Yao; Yue Li; Honggao Yan
Journal:  J Am Chem Soc       Date:  2008-02-05       Impact factor: 15.419

5.  Coupling of ribosomal L1 stalk and tRNA dynamics during translation elongation.

Authors:  Jingyi Fei; Pallav Kosuri; Daniel D MacDougall; Ruben L Gonzalez
Journal:  Mol Cell       Date:  2008-05-09       Impact factor: 17.970

6.  Structure of the yeast mitochondrial large ribosomal subunit.

Authors:  Alexey Amunts; Alan Brown; Xiao-Chen Bai; Jose L Llácer; Tanweer Hussain; Paul Emsley; Fei Long; Garib Murshudov; Sjors H W Scheres; V Ramakrishnan
Journal:  Science       Date:  2014-03-28       Impact factor: 47.728

7.  Considerations for the refinement of low-resolution crystal structures.

Authors:  Byron DeLaBarre; Axel T Brunger
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2006-07-18

8.  Features and development of Coot.

Authors:  P Emsley; B Lohkamp; W G Scott; K Cowtan
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2010-03-24

Review 9.  The scanning mechanism of eukaryotic translation initiation.

Authors:  Alan G Hinnebusch
Journal:  Annu Rev Biochem       Date:  2014-01-29       Impact factor: 23.643

10.  Ribosome structures to near-atomic resolution from thirty thousand cryo-EM particles.

Authors:  Xiao-Chen Bai; Israel S Fernandez; Greg McMullan; Sjors H W Scheres
Journal:  Elife       Date:  2013-02-19       Impact factor: 8.140

View more
  195 in total

1.  The revolution will not be crystallized: a new method sweeps through structural biology.

Authors:  Ewen Callaway
Journal:  Nature       Date:  2015-09-10       Impact factor: 49.962

Review 2.  Translational Control during Cellular Senescence.

Authors:  Matthew J Payea; Carlos Anerillas; Ravi Tharakan; Myriam Gorospe
Journal:  Mol Cell Biol       Date:  2021-01-25       Impact factor: 4.272

3.  Differences in the path to exit the ribosome across the three domains of life.

Authors:  Khanh Dao Duc; Sanjit S Batra; Nicholas Bhattacharya; Jamie H D Cate; Yun S Song
Journal:  Nucleic Acids Res       Date:  2019-05-07       Impact factor: 16.971

4.  Ribosomal Protein L13 Promotes IRES-Driven Translation of Foot-and-Mouth Disease Virus in a Helicase DDX3-Dependent Manner.

Authors:  Shichong Han; Shiqi Sun; Pinghua Li; Qun Liu; Zhihui Zhang; Hu Dong; Mengmeng Sun; Wenxue Wu; Xiaojia Wang; Huichen Guo
Journal:  J Virol       Date:  2020-01-06       Impact factor: 5.103

5.  Ribosomal protein RPL26 is the principal target of UFMylation.

Authors:  Christopher P Walczak; Dara E Leto; Lichao Zhang; Celeste Riepe; Ryan Y Muller; Paul A DaRosa; Nicholas T Ingolia; Joshua E Elias; Ron R Kopito
Journal:  Proc Natl Acad Sci U S A       Date:  2019-01-09       Impact factor: 11.205

6.  N6-Methyladenosine methyltransferase ZCCHC4 mediates ribosomal RNA methylation.

Authors:  Honghui Ma; Xiaoyun Wang; Jiabin Cai; Qing Dai; S Kundhavai Natchiar; Ruitu Lv; Kai Chen; Zhike Lu; Hao Chen; Yujiang Geno Shi; Fei Lan; Jia Fan; Bruno P Klaholz; Tao Pan; Yang Shi; Chuan He
Journal:  Nat Chem Biol       Date:  2018-12-10       Impact factor: 15.040

Review 7.  Targeting RNA in mammalian systems with small molecules.

Authors:  Anita Donlic; Amanda E Hargrove
Journal:  Wiley Interdiscip Rev RNA       Date:  2018-05-03       Impact factor: 9.957

8.  Ribosome Levels Selectively Regulate Translation and Lineage Commitment in Human Hematopoiesis.

Authors:  Rajiv K Khajuria; Mathias Munschauer; Jacob C Ulirsch; Claudia Fiorini; Leif S Ludwig; Sean K McFarland; Nour J Abdulhay; Harrison Specht; Hasmik Keshishian; D R Mani; Marko Jovanovic; Steven R Ellis; Charles P Fulco; Jesse M Engreitz; Sabina Schütz; John Lian; Karen W Gripp; Olga K Weinberg; Geraldine S Pinkus; Lee Gehrke; Aviv Regev; Eric S Lander; Hanna T Gazda; Winston Y Lee; Vikram G Panse; Steven A Carr; Vijay G Sankaran
Journal:  Cell       Date:  2018-03-15       Impact factor: 41.582

9.  Incomplete penetrance for isolated congenital asplenia in humans with mutations in translated and untranslated RPSA exons.

Authors:  Alexandre Bolze; Bertrand Boisson; Barbara Bosch; Alexander Antipenko; Matthieu Bouaziz; Paul Sackstein; Malik Chaker-Margot; Vincent Barlogis; Tracy Briggs; Elena Colino; Aurora C Elmore; Alain Fischer; Ferah Genel; Angela Hewlett; Maher Jedidi; Jadranka Kelecic; Renate Krüger; Cheng-Lung Ku; Dinakantha Kumararatne; Alain Lefevre-Utile; Sam Loughlin; Nizar Mahlaoui; Susanne Markus; Juan-Miguel Garcia; Mathilde Nizon; Matias Oleastro; Malgorzata Pac; Capucine Picard; Andrew J Pollard; Carlos Rodriguez-Gallego; Caroline Thomas; Horst Von Bernuth; Austen Worth; Isabelle Meyts; Maurizio Risolino; Licia Selleri; Anne Puel; Sebastian Klinge; Laurent Abel; Jean-Laurent Casanova
Journal:  Proc Natl Acad Sci U S A       Date:  2018-08-02       Impact factor: 11.205

10.  Whole Ribosome NMR: Dipolar Couplings and Contributions to Whole Cells.

Authors:  Rie Nygaard; Joseph A H Romaniuk; David M Rice; Lynette Cegelski
Journal:  J Phys Chem B       Date:  2017-09-29       Impact factor: 2.991

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.