Literature DB >> 29551269

Ribosome Levels Selectively Regulate Translation and Lineage Commitment in Human Hematopoiesis.

Rajiv K Khajuria1, Mathias Munschauer2, Jacob C Ulirsch3, Claudia Fiorini3, Leif S Ludwig3, Sean K McFarland3, Nour J Abdulhay3, Harrison Specht2, Hasmik Keshishian2, D R Mani2, Marko Jovanovic2, Steven R Ellis4, Charles P Fulco2, Jesse M Engreitz2, Sabina Schütz5, John Lian6, Karen W Gripp7, Olga K Weinberg8, Geraldine S Pinkus9, Lee Gehrke6, Aviv Regev2, Eric S Lander2, Hanna T Gazda10, Winston Y Lee9, Vikram G Panse5, Steven A Carr2, Vijay G Sankaran11.   

Abstract

Blood cell formation is classically thought to occur through a hierarchical differentiation process, although recent studies have shown that lineage commitment may occur earlier in hematopoietic stem and progenitor cells (HSPCs). The relevance to human blood diseases and the underlying regulation of these refined models remain poorly understood. By studying a genetic blood disorder, Diamond-Blackfan anemia (DBA), where the majority of mutations affect ribosomal proteins and the erythroid lineage is selectively perturbed, we are able to gain mechanistic insight into how lineage commitment is programmed normally and disrupted in disease. We show that in DBA, the pool of available ribosomes is limited, while ribosome composition remains constant. Surprisingly, this global reduction in ribosome levels more profoundly alters translation of a select subset of transcripts. We show how the reduced translation of select transcripts in HSPCs can impair erythroid lineage commitment, illuminating a regulatory role for ribosome levels in cellular differentiation.
Copyright © 2018 Elsevier Inc. All rights reserved.

Entities:  

Keywords:  Diamond-Blackfan anemia; GATA1; erythropoiesis; genetics; hematopoiesis; lineage commitment; ribosome; translation

Mesh:

Substances:

Year:  2018        PMID: 29551269      PMCID: PMC5866246          DOI: 10.1016/j.cell.2018.02.036

Source DB:  PubMed          Journal:  Cell        ISSN: 0092-8674            Impact factor:   41.582


  57 in total

1.  Identification and characterization of essential genes in the human genome.

Authors:  Tim Wang; Kıvanç Birsoy; Nicholas W Hughes; Kevin M Krupczak; Yorick Post; Jenny J Wei; Eric S Lander; David M Sabatini
Journal:  Science       Date:  2015-10-15       Impact factor: 47.728

2.  Functional Selectivity in Cytokine Signaling Revealed Through a Pathogenic EPO Mutation.

Authors:  Ah Ram Kim; Jacob C Ulirsch; Stephan Wilmes; Ekrem Unal; Ignacio Moraga; Musa Karakukcu; Daniel Yuan; Shideh Kazerounian; Nour J Abdulhay; David S King; Namrata Gupta; Stacey B Gabriel; Eric S Lander; Turkan Patiroglu; Alper Ozcan; Mehmet Akif Ozdemir; K Christopher Garcia; Jacob Piehler; Hanna T Gazda; Daryl E Klein; Vijay G Sankaran
Journal:  Cell       Date:  2017-03-09       Impact factor: 41.582

3.  Erythroid precursors in congenital hypoplastic (Diamond-Blackfan) anemia.

Authors:  D G Nathan; B J Clarke; D G Hillman; B P Alter; D E Housman
Journal:  J Clin Invest       Date:  1978-02       Impact factor: 14.808

4.  The role of human ribosomal proteins in the maturation of rRNA and ribosome production.

Authors:  Sara Robledo; Rachel A Idol; Dan L Crimmins; Jack H Ladenson; Philip J Mason; Monica Bessler
Journal:  RNA       Date:  2008-08-12       Impact factor: 4.942

5.  Two-phase culture in Diamond Blackfan anemia: localization of erythroid defect.

Authors:  Yaw Ohene-Abuakwa; Karen A Orfali; Carine Marius; Sarah E Ball
Journal:  Blood       Date:  2004-07-06       Impact factor: 22.113

6.  Diamond-Blackfan anemia with mandibulofacial dystostosis is heterogeneous, including the novel DBA genes TSR2 and RPS28.

Authors:  Karen W Gripp; Cynthia Curry; Ann Haskins Olney; Claudio Sandoval; Jamie Fisher; Jessica Xiao-Ling Chong; Lisa Pilchman; Rebecca Sahraoui; Deborah L Stabley; Katia Sol-Church
Journal:  Am J Med Genet A       Date:  2014-06-18       Impact factor: 2.802

Review 7.  Translational control by 5'-untranslated regions of eukaryotic mRNAs.

Authors:  Alan G Hinnebusch; Ivaylo P Ivanov; Nahum Sonenberg
Journal:  Science       Date:  2016-06-17       Impact factor: 47.728

Review 8.  Scaling single-cell genomics from phenomenology to mechanism.

Authors:  Amos Tanay; Aviv Regev
Journal:  Nature       Date:  2017-01-18       Impact factor: 49.962

9.  Rate-limiting steps in yeast protein translation.

Authors:  Premal Shah; Yang Ding; Malwina Niemczyk; Grzegorz Kudla; Joshua B Plotkin
Journal:  Cell       Date:  2013-06-20       Impact factor: 41.582

10.  The unfolded protein response governs integrity of the haematopoietic stem-cell pool during stress.

Authors:  Peter van Galen; Antonija Kreso; Nathan Mbong; David G Kent; Timothy Fitzmaurice; Joseph E Chambers; Stephanie Xie; Elisa Laurenti; Karin Hermans; Kolja Eppert; Stefan J Marciniak; Jane C Goodall; Anthony R Green; Bradly G Wouters; Erno Wienholds; John E Dick
Journal:  Nature       Date:  2014-04-28       Impact factor: 49.962

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  133 in total

1.  A potential link between p53, cell competition and ribosomopathy in mammals and in Drosophila.

Authors:  Nicholas E Baker; Marianthi Kiparaki; Chaitali Khan
Journal:  Dev Biol       Date:  2018-12-02       Impact factor: 3.582

2.  Small and Large Ribosomal Subunit Deficiencies Lead to Distinct Gene Expression Signatures that Reflect Cellular Growth Rate.

Authors:  Ze Cheng; Christopher Frederick Mugler; Abdurrahman Keskin; Stefanie Hodapp; Leon Yen-Lee Chan; Karsten Weis; Philipp Mertins; Aviv Regev; Marko Jovanovic; Gloria Ann Brar
Journal:  Mol Cell       Date:  2018-11-29       Impact factor: 17.970

3.  The Genetic Landscape of Diamond-Blackfan Anemia.

Authors:  Jacob C Ulirsch; Jeffrey M Verboon; Shideh Kazerounian; Michael H Guo; Daniel Yuan; Leif S Ludwig; Robert E Handsaker; Nour J Abdulhay; Claudia Fiorini; Giulio Genovese; Elaine T Lim; Aaron Cheng; Beryl B Cummings; Katherine R Chao; Alan H Beggs; Casie A Genetti; Colin A Sieff; Peter E Newburger; Edyta Niewiadomska; Michal Matysiak; Adrianna Vlachos; Jeffrey M Lipton; Eva Atsidaftos; Bertil Glader; Anupama Narla; Pierre-Emmanuel Gleizes; Marie-Françoise O'Donohue; Nathalie Montel-Lehry; David J Amor; Steven A McCarroll; Anne H O'Donnell-Luria; Namrata Gupta; Stacey B Gabriel; Daniel G MacArthur; Eric S Lander; Monkol Lek; Lydie Da Costa; David G Nathan; Andrei A Korostelev; Ron Do; Vijay G Sankaran; Hanna T Gazda
Journal:  Am J Hum Genet       Date:  2018-11-29       Impact factor: 11.025

Review 4.  Translational Control during Cellular Senescence.

Authors:  Matthew J Payea; Carlos Anerillas; Ravi Tharakan; Myriam Gorospe
Journal:  Mol Cell Biol       Date:  2021-01-25       Impact factor: 4.272

5.  Single-cell analyses demonstrate that a heme-GATA1 feedback loop regulates red cell differentiation.

Authors:  Raymond T Doty; Xiaowei Yan; Christopher Lausted; Adam D Munday; Zhantao Yang; Danielle Yi; Neda Jabbari; Li Liu; Siobán B Keel; Qiang Tian; Janis L Abkowitz
Journal:  Blood       Date:  2018-12-10       Impact factor: 22.113

Review 6.  Heme-regulated eIF2α kinase in erythropoiesis and hemoglobinopathies.

Authors:  Jane-Jane Chen; Shuping Zhang
Journal:  Blood       Date:  2019-11-14       Impact factor: 22.113

7.  Reprogramming of translation in yeast cells impaired for ribosome recycling favors short, efficiently translated mRNAs.

Authors:  Swati Gaikwad; Fardin Ghobakhlou; David J Young; Jyothsna Visweswaraiah; Hongen Zhang; Alan G Hinnebusch
Journal:  Elife       Date:  2021-03-25       Impact factor: 8.140

8.  Generally applicable transcriptome-wide analysis of translation using anota2seq.

Authors:  Christian Oertlin; Julie Lorent; Carl Murie; Luc Furic; Ivan Topisirovic; Ola Larsson
Journal:  Nucleic Acids Res       Date:  2019-07-09       Impact factor: 16.971

Review 9.  Ribosomopathies: Old Concepts, New Controversies.

Authors:  Katherine I Farley-Barnes; Lisa M Ogawa; Susan J Baserga
Journal:  Trends Genet       Date:  2019-07-31       Impact factor: 11.639

10.  Incomplete penetrance for isolated congenital asplenia in humans with mutations in translated and untranslated RPSA exons.

Authors:  Alexandre Bolze; Bertrand Boisson; Barbara Bosch; Alexander Antipenko; Matthieu Bouaziz; Paul Sackstein; Malik Chaker-Margot; Vincent Barlogis; Tracy Briggs; Elena Colino; Aurora C Elmore; Alain Fischer; Ferah Genel; Angela Hewlett; Maher Jedidi; Jadranka Kelecic; Renate Krüger; Cheng-Lung Ku; Dinakantha Kumararatne; Alain Lefevre-Utile; Sam Loughlin; Nizar Mahlaoui; Susanne Markus; Juan-Miguel Garcia; Mathilde Nizon; Matias Oleastro; Malgorzata Pac; Capucine Picard; Andrew J Pollard; Carlos Rodriguez-Gallego; Caroline Thomas; Horst Von Bernuth; Austen Worth; Isabelle Meyts; Maurizio Risolino; Licia Selleri; Anne Puel; Sebastian Klinge; Laurent Abel; Jean-Laurent Casanova
Journal:  Proc Natl Acad Sci U S A       Date:  2018-08-02       Impact factor: 11.205

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