Literature DB >> 25850980

Fast GPU-based computation of spatial multigrid multiframe LMEM for PET.

Moulay Ali Nassiri1, Jean-François Carrier2, Philippe Després3,4.   

Abstract

Significant efforts were invested during the last decade to accelerate PET list-mode reconstructions, notably with GPU devices. However, the computation time per event is still relatively long, and the list-mode efficiency on the GPU is well below the histogram-mode efficiency. Since list-mode data are not arranged in any regular pattern, costly accesses to the GPU global memory can hardly be optimized and geometrical symmetries cannot be used. To overcome obstacles that limit the acceleration of reconstruction from list-mode on the GPU, a multigrid and multiframe approach of an expectation-maximization algorithm was developed. The reconstruction process is started during data acquisition, and calculations are executed concurrently on the GPU and the CPU, while the system matrix is computed on-the-fly. A new convergence criterion also was introduced, which is computationally more efficient on the GPU. The implementation was tested on a Tesla C2050 GPU device for a Gemini GXL PET system geometry. The results show that the proposed algorithm (multigrid and multiframe list-mode expectation-maximization, MGMF-LMEM) converges to the same solution as the LMEM algorithm more than three times faster. The execution time of the MGMF-LMEM algorithm was 1.1 s per million of events on the Tesla C2050 hardware used, for a reconstructed space of 188 x 188 x 57 voxels of 2 x 2 x 3.15 mm3. For 17- and 22-mm simulated hot lesions, the MGMF-LMEM algorithm led on the first iteration to contrast recovery coefficients (CRC) of more than 75 % of the maximum CRC while achieving a minimum in the relative mean square error. Therefore, the MGMF-LMEM algorithm can be used as a one-pass method to perform real-time reconstructions for low-count acquisitions, as in list-mode gated studies. The computation time for one iteration and 60 millions of events was approximately 66 s.

Keywords:  GPU; List-mode; Multiframe; Multigrid; PET; Reconstruction

Mesh:

Year:  2015        PMID: 25850980     DOI: 10.1007/s11517-015-1284-9

Source DB:  PubMed          Journal:  Med Biol Eng Comput        ISSN: 0140-0118            Impact factor:   2.602


  40 in total

1.  Survey: interpolation methods in medical image processing.

Authors:  T M Lehmann; C Gönner; K Spitzer
Journal:  IEEE Trans Med Imaging       Date:  1999-11       Impact factor: 10.048

2.  Regularized image reconstruction algorithms for positron emission tomography.

Authors:  Ji-Ho Chang; John M M Anderson; John R Votaw
Journal:  IEEE Trans Med Imaging       Date:  2004-09       Impact factor: 10.048

3.  Fully 3D list-mode time-of-flight PET image reconstruction on GPUs using CUDA.

Authors:  Jing-Yu Cui; Guillem Pratx; Sven Prevrhal; Craig S Levin
Journal:  Med Phys       Date:  2011-12       Impact factor: 4.071

4.  Noise properties of the EM algorithm: II. Monte Carlo simulations.

Authors:  D W Wilson; B M Tsui; H H Barrett
Journal:  Phys Med Biol       Date:  1994-05       Impact factor: 3.609

5.  Fast reconstruction of 3D time-of-flight PET data by axial rebinning and transverse mashing.

Authors:  Stefaan Vandenberghe; Margaret E Daube-Witherspoon; Robert M Lewitt; Joel S Karp
Journal:  Phys Med Biol       Date:  2006-03-01       Impact factor: 3.609

6.  Comparison of interpolating methods for image resampling.

Authors:  J Parker; R V Kenyon; D E Troxel
Journal:  IEEE Trans Med Imaging       Date:  1983       Impact factor: 10.048

7.  Fully 4D list-mode reconstruction applied to respiratory-gated PET scans.

Authors:  N Grotus; A J Reader; S Stute; J C Rosenwald; P Giraud; I Buvat
Journal:  Phys Med Biol       Date:  2009-02-25       Impact factor: 3.609

8.  PET image reconstruction: A stopping rule for the MLEM algorithm based on properties of the updating coefficients.

Authors:  Anastasios Gaitanis; George Kontaxakis; George Spyrou; George Panayiotakis; George Tzanakos
Journal:  Comput Med Imaging Graph       Date:  2009-09-09       Impact factor: 4.790

9.  Fully-3D PET image reconstruction using scanner-independent, adaptive projection data and highly rotation-symmetric voxel assemblies.

Authors:  J J Scheins; H Herzog; N J Shah
Journal:  IEEE Trans Med Imaging       Date:  2011-01-31       Impact factor: 10.048

10.  Enhanced 3D PET OSEM reconstruction using inter-update Metz filtering.

Authors:  M Jacobson; R Levkovitz; A Ben-Tal; K Thielemans; T Spinks; D Belluzzo; E Pagani; V Bettinardi; M C Gilardi; A Zverovich; G Mitra
Journal:  Phys Med Biol       Date:  2000-08       Impact factor: 3.609

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.