Literature DB >> 25848822

A "Smart" ¹²⁸Xe NMR Biosensor for pH-Dependent Cell Labeling.

Brittany A Riggle1, Yanfei Wang1, Ivan J Dmochowski1.   

Abstract

Here we present a "smart" xenon-129 NMR biosensor that undergoes a peptide conformational change and labels cells in acidic environments. To a cryptophane host molecule with high Xe affinity, we conjugated a 30mer EALA-repeat peptide that is α-helical at pH 5.5 and disordered at pH 7.5. The (129)Xe NMR chemical shift at room temperature was strongly pH-dependent (Δδ = 3.4 ppm): δ = 64.2 ppm at pH 7.5 vs δ = 67.6 ppm at pH 5.5, where Trp(peptide)-cryptophane interactions were evidenced by Trp fluorescence quenching. Using hyper-CEST NMR, we probed peptidocryptophane detection limits at low-picomolar (10(-11) M) concentration, which compares favorably to other NMR pH reporters at 10(-2)-10(-3) M. Finally, in biosensor-HeLa cell solutions, peptide-cell membrane insertion at pH 5.5 generated a 13.4 ppm downfield cryptophane-(129)Xe NMR chemical shift relative to pH 7.5 studies. This highlights new uses for (129)Xe as an ultrasensitive probe of peptide structure and function, along with potential applications for pH-dependent cell labeling in cancer diagnosis and treatment.

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Year:  2015        PMID: 25848822      PMCID: PMC4976068          DOI: 10.1021/jacs.5b01938

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  63 in total

1.  Functionalized xenon as a biosensor.

Authors:  M M Spence; S M Rubin; I E Dimitrov; E J Ruiz; D E Wemmer; A Pines; S Q Yao; F Tian; P G Schultz
Journal:  Proc Natl Acad Sci U S A       Date:  2001-09-04       Impact factor: 11.205

2.  A cryptophane core optimized for xenon encapsulation.

Authors:  Heather A Fogarty; Patrick Berthault; Thierry Brotin; Gaspard Huber; Hervé Desvaux; Jean-Pierre Dutasta
Journal:  J Am Chem Soc       Date:  2007-08-03       Impact factor: 15.419

3.  Effect of pH and counterions on the encapsulation properties of xenon in water-soluble cryptophanes.

Authors:  Patrick Berthault; Hervé Desvaux; Thierry Wendlinger; Marina Gyejacquot; Antoine Stopin; Thierry Brotin; Jean-Pierre Dutasta; Yves Boulard
Journal:  Chemistry       Date:  2010-11-15       Impact factor: 5.236

4.  High resolution pH(e) imaging of rat glioma using pH-dependent relaxivity.

Authors:  Maria L Garcia-Martin; Gary V Martinez; Natarajan Raghunand; A Dean Sherry; Shanrong Zhang; Robert J Gillies
Journal:  Magn Reson Med       Date:  2006-02       Impact factor: 4.668

5.  Measuring in vivo tumor pHe with CEST-FISP MRI.

Authors:  Vipul R Sheth; Yuguo Li; Liu Qi Chen; Christine M Howison; Chris A Flask; Mark D Pagel
Journal:  Magn Reson Med       Date:  2011-10-25       Impact factor: 4.668

6.  Shorter synthesis of trifunctionalized cryptophane-A derivatives.

Authors:  Olena Taratula; P Aru Hill; Yubin Bai; Najat S Khan; Ivan J Dmochowski
Journal:  Org Lett       Date:  2011-02-18       Impact factor: 6.005

7.  A water-soluble Xe@cryptophane-111 complex exhibits very high thermodynamic stability and a peculiar (129)Xe NMR chemical shift.

Authors:  Robert M Fairchild; Akil I Joseph; K Travis Holman; Heather A Fogarty; Thierry Brotin; Jean-Pierre Dutasta; Céline Boutin; Gaspard Huber; Patrick Berthault
Journal:  J Am Chem Soc       Date:  2010-11-10       Impact factor: 15.419

Review 8.  Tumor pH and its measurement.

Authors:  Xiaomeng Zhang; Yuxiang Lin; Robert J Gillies
Journal:  J Nucl Med       Date:  2010-07-21       Impact factor: 10.057

9.  An artificial virus-like nano carrier system: enhanced endosomal escape of nanoparticles via synergistic action of pH-sensitive fusogenic peptide derivatives.

Authors:  Kentaro Sasaki; Kentaro Kogure; Shinji Chaki; Yoshio Nakamura; Rumiko Moriguchi; Hirofumi Hamada; Radostin Danev; Kuniaki Nagayama; Shiroh Futaki; Hideyoshi Harashima
Journal:  Anal Bioanal Chem       Date:  2008-03-20       Impact factor: 4.142

10.  Systems biology of vaccination for seasonal influenza in humans.

Authors:  Helder I Nakaya; Jens Wrammert; Eva K Lee; Luigi Racioppi; Stephanie Marie-Kunze; W Nicholas Haining; Anthony R Means; Sudhir P Kasturi; Nooruddin Khan; Gui-Mei Li; Megan McCausland; Vibhu Kanchan; Kenneth E Kokko; Shuzhao Li; Rivka Elbein; Aneesh K Mehta; Alan Aderem; Kanta Subbarao; Rafi Ahmed; Bali Pulendran
Journal:  Nat Immunol       Date:  2011-07-10       Impact factor: 25.606

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  21 in total

Review 1.  Collaborative routes to clarifying the murky waters of aqueous supramolecular chemistry.

Authors:  Paul S Cremer; Amar H Flood; Bruce C Gibb; David L Mobley
Journal:  Nat Chem       Date:  2017-12-19       Impact factor: 24.427

2.  Cucurbit[6]uril is an ultrasensitive (129)Xe NMR contrast agent.

Authors:  Yanfei Wang; Ivan J Dmochowski
Journal:  Chem Commun (Camb)       Date:  2015-05-28       Impact factor: 6.222

3.  A Genetically Encoded β-Lactamase Reporter for Ultrasensitive (129) Xe NMR in Mammalian Cells.

Authors:  Yanfei Wang; Benjamin W Roose; Eugene J Palovcak; Vincenzo Carnevale; Ivan J Dmochowski
Journal:  Angew Chem Int Ed Engl       Date:  2016-06-15       Impact factor: 15.336

4.  Cryptophane Nanoscale Assemblies Expand 129Xe NMR Biosensing.

Authors:  Serge D Zemerov; Benjamin W Roose; Mara L Greenberg; Yanfei Wang; Ivan J Dmochowski
Journal:  Anal Chem       Date:  2018-06-01       Impact factor: 6.986

5.  Directly Functionalized Cucurbit[7]uril as a Biosensor for the Selective Detection of Protein Interactions by 129 Xe hyperCEST NMR.

Authors:  Ashley E Truxal; Liping Cao; Lyle Isaacs; David E Wemmer; Alexander Pines
Journal:  Chemistry       Date:  2019-03-29       Impact factor: 5.236

Review 6.  NMR Hyperpolarization Techniques of Gases.

Authors:  Danila A Barskiy; Aaron M Coffey; Panayiotis Nikolaou; Dmitry M Mikhaylov; Boyd M Goodson; Rosa T Branca; George J Lu; Mikhail G Shapiro; Ville-Veikko Telkki; Vladimir V Zhivonitko; Igor V Koptyug; Oleg G Salnikov; Kirill V Kovtunov; Valerii I Bukhtiyarov; Matthew S Rosen; Michael J Barlow; Shahideh Safavi; Ian P Hall; Leif Schröder; Eduard Y Chekmenev
Journal:  Chemistry       Date:  2016-12-05       Impact factor: 5.236

Review 7.  Molecular Sensing with Host Systems for Hyperpolarized 129Xe.

Authors:  Jabadurai Jayapaul; Leif Schröder
Journal:  Molecules       Date:  2020-10-11       Impact factor: 4.411

8.  A cryptophane-based "turn-on" 129Xe NMR biosensor for monitoring calmodulin.

Authors:  Brittany A Riggle; Mara L Greenberg; Yanfei Wang; Rebecca F Wissner; Serge D Zemerov; E James Petersson; Ivan J Dmochowski
Journal:  Org Biomol Chem       Date:  2017-10-31       Impact factor: 3.876

9.  129Xe NMR-Protein Sensor Reveals Cellular Ribose Concentration.

Authors:  Serge D Zemerov; Benjamin W Roose; Kelsey L Farenhem; Zhuangyu Zhao; Madison A Stringer; Aaron R Goldman; David W Speicher; Ivan J Dmochowski
Journal:  Anal Chem       Date:  2020-09-23       Impact factor: 6.986

10.  High Xe density, high photon flux, stopped-flow spin-exchange optical pumping: Simulations versus experiments.

Authors:  Jason G Skinner; Kaili Ranta; Nicholas Whiting; Aaron M Coffey; Panayiotis Nikolaou; Matthew S Rosen; Eduard Y Chekmenev; Peter G Morris; Michael J Barlow; Boyd M Goodson
Journal:  J Magn Reson       Date:  2020-01-16       Impact factor: 2.229

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