Literature DB >> 25831510

DNA-mediated engineering of multicomponent enzyme crystals.

Jeffrey D Brodin1, Evelyn Auyeung2, Chad A Mirkin3.   

Abstract

The ability to predictably control the coassembly of multiple nanoscale building blocks, especially those with disparate chemical and physical properties such as biomolecules and inorganic nanoparticles, has far-reaching implications in catalysis, sensing, and photonics, but a generalizable strategy for engineering specific contacts between these particles is an outstanding challenge. This is especially true in the case of proteins, where the types of possible interparticle interactions are numerous, diverse, and complex. Herein, we explore the concept of trading protein-protein interactions for DNA-DNA interactions to direct the assembly of two nucleic-acid-functionalized proteins with distinct surface chemistries into six unique lattices composed of catalytically active proteins, or of a combination of proteins and DNA-modified gold nanoparticles. The programmable nature of DNA-DNA interactions used in this strategy allows us to control the lattice symmetries and unit cell constants, as well as the compositions and habit, of the resulting crystals. This study provides a potentially generalizable strategy for constructing a unique class of materials that take advantage of the diverse morphologies, surface chemistries, and functionalities of proteins for assembling functional crystalline materials.

Keywords:  DNA-programmable assembly; biomaterials; nanoscience; self-assembly; superlattice

Mesh:

Substances:

Year:  2015        PMID: 25831510      PMCID: PMC4403210          DOI: 10.1073/pnas.1503533112

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  41 in total

1.  RECONSTITUTION OF ACID-DENATURED CATALASE.

Authors:  T SAMEJIMA; J T YANG
Journal:  J Biol Chem       Date:  1963-10       Impact factor: 5.157

2.  Synthetically programmable nanoparticle superlattices using a hollow three-dimensional spacer approach.

Authors:  Evelyn Auyeung; Joshua I Cutler; Robert J Macfarlane; Matthew R Jones; Jinsong Wu; George Liu; Ke Zhang; Kyle D Osberg; Chad A Mirkin
Journal:  Nat Nanotechnol       Date:  2011-12-11       Impact factor: 39.213

3.  Nanoparticle superlattice engineering with DNA.

Authors:  Robert J Macfarlane; Byeongdu Lee; Matthew R Jones; Nadine Harris; George C Schatz; Chad A Mirkin
Journal:  Science       Date:  2011-10-14       Impact factor: 47.728

Review 4.  An overview of structural DNA nanotechnology.

Authors:  Nadrian C Seeman
Journal:  Mol Biotechnol       Date:  2007-07-12       Impact factor: 2.695

5.  DNA-guided crystallization of colloidal nanoparticles.

Authors:  Dmytro Nykypanchuk; Mathew M Maye; Daniel van der Lelie; Oleg Gang
Journal:  Nature       Date:  2008-01-31       Impact factor: 49.962

6.  Controlling the lattice parameters of gold nanoparticle FCC crystals with duplex DNA linkers.

Authors:  Haley D Hill; Robert J Macfarlane; Andrew J Senesi; Byeongdu Lee; Sung Yong Park; Chad A Mirkin
Journal:  Nano Lett       Date:  2008-06-24       Impact factor: 11.189

7.  Self-Assembly of a Tetrahedral Lectin into Predesigned Diamondlike Protein Crystals.

Authors: 
Journal:  Angew Chem Int Ed Engl       Date:  1999-08       Impact factor: 15.336

8.  A general approach to DNA-programmable atom equivalents.

Authors:  Chuan Zhang; Robert J Macfarlane; Kaylie L Young; Chung Hang J Choi; Liangliang Hao; Evelyn Auyeung; Guoliang Liu; Xiaozhu Zhou; Chad A Mirkin
Journal:  Nat Mater       Date:  2013-05-19       Impact factor: 43.841

9.  Protein crystalline frameworks with controllable interpenetration directed by dual supramolecular interactions.

Authors:  Fuji Sakai; Guang Yang; Manfred S Weiss; Yijiang Liu; Guosong Chen; Ming Jiang
Journal:  Nat Commun       Date:  2014-08-21       Impact factor: 14.919

10.  A general strategy for the DNA-mediated self-assembly of functional nanoparticles into heterogeneous systems.

Authors:  Yugang Zhang; Fang Lu; Kevin G Yager; Daniel van der Lelie; Oleg Gang
Journal:  Nat Nanotechnol       Date:  2013-10-20       Impact factor: 39.213

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  31 in total

1.  DNA-linked superlattices get into shape.

Authors:  Bert Nickel; Tim Liedl
Journal:  Nat Mater       Date:  2015-08       Impact factor: 43.841

2.  Particle analogs of electrons in colloidal crystals.

Authors:  Martin Girard; Shunzhi Wang; Jingshan S Du; Anindita Das; Ziyin Huang; Vinayak P Dravid; Byeongdu Lee; Chad A Mirkin; Monica Olvera de la Cruz
Journal:  Science       Date:  2019-06-21       Impact factor: 47.728

3.  Modular Self-Assembly of Protein Cage Lattices for Multistep Catalysis.

Authors:  Masaki Uchida; Kimberly McCoy; Masafumi Fukuto; Lin Yang; Hideyuki Yoshimura; Heini M Miettinen; Ben LaFrance; Dustin P Patterson; Benjamin Schwarz; Jonathan A Karty; Peter E Prevelige; Byeongdu Lee; Trevor Douglas
Journal:  ACS Nano       Date:  2017-11-20       Impact factor: 15.881

4.  DNA-Directed Protein Packing within Single Crystals.

Authors:  Peter H Winegar; Oliver G Hayes; Janet R McMillan; C Adrian Figg; Pamela J Focia; Chad A Mirkin
Journal:  Chem       Date:  2020-03-23       Impact factor: 22.804

5.  Modular and Chemically Responsive Oligonucleotide "Bonds" in Nanoparticle Superlattices.

Authors:  Stacey N Barnaby; Ryan V Thaner; Michael B Ross; Keith A Brown; George C Schatz; Chad A Mirkin
Journal:  J Am Chem Soc       Date:  2015-10-14       Impact factor: 15.419

6.  Programming colloidal bonding using DNA strand-displacement circuitry.

Authors:  Xiang Zhou; Dongbao Yao; Wenqiang Hua; Ningdong Huang; Xiaowei Chen; Liangbin Li; Miao He; Yunhan Zhang; Yijun Guo; Shiyan Xiao; Fenggang Bian; Haojun Liang
Journal:  Proc Natl Acad Sci U S A       Date:  2020-03-04       Impact factor: 11.205

Review 7.  Functional DNA Molecules Enable Selective and Stimuli-Responsive Nanoparticles for Biomedical Applications.

Authors:  Lele Li; Hang Xing; Jingjing Zhang; Yi Lu
Journal:  Acc Chem Res       Date:  2019-08-14       Impact factor: 22.384

8.  Drug-Loaded Polymeric Spherical Nucleic Acids: Enhancing Colloidal Stability and Cellular Uptake of Polymeric Nanoparticles through DNA Surface-Functionalization.

Authors:  Resham J Banga; Sai Archana Krovi; Suguna P Narayan; Anthony J Sprangers; Guoliang Liu; Chad A Mirkin; SonBinh T Nguyen
Journal:  Biomacromolecules       Date:  2017-01-18       Impact factor: 6.988

Review 9.  Functional protein nanostructures: a chemical toolbox.

Authors:  Seah Ling Kuan; Fernando R G Bergamini; Tanja Weil
Journal:  Chem Soc Rev       Date:  2018-11-19       Impact factor: 54.564

10.  The Significance of Multivalent Bonding Motifs and "Bond Order" in DNA-Directed Nanoparticle Crystallization.

Authors:  Ryan V Thaner; Ibrahim Eryazici; Robert J Macfarlane; Keith A Brown; Byeongdu Lee; SonBinh T Nguyen; Chad A Mirkin
Journal:  J Am Chem Soc       Date:  2016-05-05       Impact factor: 15.419

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