Literature DB >> 27148838

The Significance of Multivalent Bonding Motifs and "Bond Order" in DNA-Directed Nanoparticle Crystallization.

Ryan V Thaner1, Ibrahim Eryazici1, Robert J Macfarlane1, Keith A Brown1, Byeongdu Lee2, SonBinh T Nguyen1, Chad A Mirkin1.   

Abstract

Multivalent oligonucleotide-based bonding elements have been synthesized and studied for the assembly and crystallization of gold nanoparticles. Through the use of organic branching points, divalent and trivalent DNA linkers were readily incorporated into the oligonucleotide shells that define DNA-nanoparticles and compared to monovalent linker systems. These multivalent bonding motifs enable the change of "bond strength" between particles and therefore modulate the effective "bond order." In addition, the improved accessibility of strands between neighboring particles, either due to multivalency or modifications to increase strand flexibility, gives rise to superlattices with less strain in the crystallites compared to traditional designs. Furthermore, the increased availability and number of binding modes also provide a new variable that allows previously unobserved crystal structures to be synthesized, as evidenced by the formation of a thorium phosphide superlattice.

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Year:  2016        PMID: 27148838      PMCID: PMC4928491          DOI: 10.1021/jacs.6b02479

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  39 in total

1.  Nanoparticle superlattice engineering with DNA.

Authors:  Robert J Macfarlane; Byeongdu Lee; Matthew R Jones; Nadine Harris; George C Schatz; Chad A Mirkin
Journal:  Science       Date:  2011-10-14       Impact factor: 47.728

2.  Enhancing DNA-Mediated Assemblies of Supramolecular Cage Dimers through Tuning Core Flexibility and DNA Length--A Combined Experimental-Modeling Study.

Authors:  Bong Jin Hong; Vincent Y Cho; Reiner Bleher; George C Schatz; SonBinh T Nguyen
Journal:  J Am Chem Soc       Date:  2015-10-12       Impact factor: 15.419

3.  Molecular dynamics studies of ion distributions for DNA duplexes and DNA clusters: salt effects and connection to DNA melting.

Authors:  Hai Long; Alexander Kudlay; George C Schatz
Journal:  J Phys Chem B       Date:  2006-02-16       Impact factor: 2.991

4.  DNA-guided crystallization of colloidal nanoparticles.

Authors:  Dmytro Nykypanchuk; Mathew M Maye; Daniel van der Lelie; Oleg Gang
Journal:  Nature       Date:  2008-01-31       Impact factor: 49.962

5.  Two base pair duplexes suffice to build a novel material.

Authors:  Martin Meng; Carolin Ahlborn; Matthias Bauer; Oliver Plietzsch; Shahid A Soomro; Arunoday Singh; Thierry Muller; Wolfgang Wenzel; Stefan Bräse; Clemens Richert
Journal:  Chembiochem       Date:  2009-05-25       Impact factor: 3.164

6.  Diamond family of nanoparticle superlattices.

Authors:  Wenyan Liu; Miho Tagawa; Huolin L Xin; Tong Wang; Hamed Emamy; Huilin Li; Kevin G Yager; Francis W Starr; Alexei V Tkachenko; Oleg Gang
Journal:  Science       Date:  2016-02-05       Impact factor: 47.728

7.  DNA-mediated engineering of multicomponent enzyme crystals.

Authors:  Jeffrey D Brodin; Evelyn Auyeung; Chad A Mirkin
Journal:  Proc Natl Acad Sci U S A       Date:  2015-03-23       Impact factor: 11.205

Review 8.  Nanomaterials. Programmable materials and the nature of the DNA bond.

Authors:  Matthew R Jones; Nadrian C Seeman; Chad A Mirkin
Journal:  Science       Date:  2015-02-20       Impact factor: 47.728

9.  Sharpening the thermal release of DNA from nanoparticles: towards a sequential release strategy.

Authors:  Julián A Díaz; Julianne M Gibbs-Davis
Journal:  Small       Date:  2013-01-23       Impact factor: 13.281

10.  Oligonucleotide dendrimers: synthesis and use as polylabelled DNA probes.

Authors:  M S Shchepinov; I A Udalova; A J Bridgman; E M Southern
Journal:  Nucleic Acids Res       Date:  1997-11-15       Impact factor: 16.971

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  1 in total

1.  The competing effects of core rigidity and linker flexibility in the nanoassembly of trivalent small molecule-DNA hybrids (SMDH3s)-a synergistic experimental-modeling study.

Authors:  Vincent Y Cho; Bong Jin Hong; Kevin L Kohlstedt; George C Schatz; SonBinh T Nguyen
Journal:  Nanoscale       Date:  2017-08-31       Impact factor: 7.790

  1 in total

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