Literature DB >> 25820763

Optimized co-solute paramagnetic relaxation enhancement for the rapid NMR analysis of a highly fibrillogenic peptide.

Nur Alia Oktaviani1, Michael W Risør, Young-Ho Lee, Rik P Megens, Djurre H de Jong, Renee Otten, Ruud M Scheek, Jan J Enghild, Niels Chr Nielsen, Takahisa Ikegami, Frans A A Mulder.   

Abstract

Co-solute paramagnetic relaxation enhancement (PRE) is an attractive way to speed up data acquisition in NMR spectroscopy by shortening the T 1 relaxation time of the nucleus of interest and thus the necessary recycle delay. Here, we present the rationale to utilize high-spin iron(III) as the optimal transition metal for this purpose and characterize the properties of its neutral chelate form Fe(DO3A) as a suitable PRE agent. Fe(DO3A) effectively reduces the T 1 values across the entire sequence of the intrinsically disordered protein α-synuclein with negligible impact on line width. The agent is better suited than currently used alternatives, shows no specific interaction with the polypeptide chain and, due to its high relaxivity, is effective at low concentrations and in 'proton-less' NMR experiments. By using Fe(DO3A) we were able to complete the backbone resonance assignment of a highly fibrillogenic peptide from α1-antitrypsin by acquiring the necessary suite of multidimensional NMR datasets in 3 h.

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Year:  2015        PMID: 25820763     DOI: 10.1007/s10858-015-9925-8

Source DB:  PubMed          Journal:  J Biomol NMR        ISSN: 0925-2738            Impact factor:   2.835


  30 in total

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Journal:  J Biomol NMR       Date:  2004-04       Impact factor: 2.835

2.  Fast acquisition of NMR spectra using Fourier transform of non-equispaced data.

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3.  Protonless NMR experiments for sequence-specific assignment of backbone nuclei in unfolded proteins.

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Authors:  W Dichtl; F Moraga; M P Ares; M Crisby; J Nilsson; S Lindgren; S Janciauskiene
Journal:  Mol Cell Biol Res Commun       Date:  2000-07

6.  NMRPipe: a multidimensional spectral processing system based on UNIX pipes.

Authors:  F Delaglio; S Grzesiek; G W Vuister; G Zhu; J Pfeifer; A Bax
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7.  Identification of protein surfaces by NMR measurements with a pramagnetic Gd(III) chelate.

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Journal:  J Am Chem Soc       Date:  2002-01-23       Impact factor: 15.419

8.  Longitudinal (1)H relaxation optimization in TROSY NMR spectroscopy.

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9.  A soluble oligomer of tau associated with fiber formation analyzed by NMR.

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Review 10.  Studying the structure and dynamics of biomolecules by using soluble paramagnetic probes.

Authors:  Henry G Hocking; Klaus Zangger; Tobias Madl
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  9 in total

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Authors:  Zhou Gong; Charles D Schwieters; Chun Tang
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Authors:  Yuichi Yoshimura; Mats A Holmberg; Predrag Kukic; Camilla B Andersen; Alejandro Mata-Cabana; S Fabio Falsone; Michele Vendruscolo; Ellen A A Nollen; Frans A A Mulder
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4.  Solution NMR Experiment for Measurement of (15)N-(1)H Residual Dipolar Couplings in Large Proteins and Supramolecular Complexes.

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5.  All-Atom Simulations Reveal How Single-Point Mutations Promote Serpin Misfolding.

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Review 6.  Paramagnetic Chemical Probes for Studying Biological Macromolecules.

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7.  Conservation of the Amyloid Interactome Across Diverse Fibrillar Structures.

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8.  The contribution of electrostatics to hydrogen exchange in the unfolded protein state.

Authors:  Rupashree Dass; Enrico Corlianò; Frans A A Mulder
Journal:  Biophys J       Date:  2021-08-08       Impact factor: 3.699

9.  Six- and seven-dimensional experiments by combination of sparse random sampling and projection spectroscopy dedicated for backbone resonance assignment of intrinsically disordered proteins.

Authors:  Szymon Żerko; Wiktor Koźmiński
Journal:  J Biomol NMR       Date:  2015-09-24       Impact factor: 2.835

  9 in total

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