| Literature DB >> 25809965 |
Dmitry A Los1, Kirill S Mironov2.
Abstract
Fatty acid composition of individual species of cyanobacteria is conserved and it may be used as a phylogenetic marker. The previously proposed classification system was based solely on biochemical data. Today, new genomic data are available, which support a need to update a previously postulated FA-based classification of cyanobacteria. These changes are necessary in order to adjust and synchronize biochemical, physiological and genomic data, which may help to establish an adequate comprehensive taxonomic system for cyanobacteria in the future. Here, we propose an update to the classification system of cyanobacteria based on their fatty acid composition.Entities:
Year: 2015 PMID: 25809965 PMCID: PMC4390868 DOI: 10.3390/life5010554
Source DB: PubMed Journal: Life (Basel) ISSN: 2075-1729
Fatty-acid composition of the total lipids from various cyanobacterial strains (adapted from Murata et al. 1992 [13]).
| Organism | Fatty Acids | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 14:0 | 14:1 | 16:0 | 16:1 | 16:2 | 18:0 | 18:1 | 18:2 | α18:3 | γ18:3 | 18:4 | ||
| Δ9 | Δ9 | Δ9,12 | Δ9 | Δ9,12 | Δ9,12,15 | Δ6,9,12 | Δ6,9,12,15 | |||||
| | F | + | − | + | + | − | + | + | − | − | − | − |
| | U | + | − | + | + | − | + | + | − | − | − | − |
| | U | + | − | + | + | − | + | + | − | − | − | − |
| | U | − | − | + | + | − | + | + | − | − | − | − |
| | F | + | − | + | + | − | + | + | + | + | − | − |
| | F | + | − | + | + | − | + | + | + | + | − | − |
| | F | − | − | + | + | + | + | + | + | + | − | − |
| | U | + | − | + | + | − | + | + | + | + | − | − |
| | F | + | + | + | + | − | + | + | + | − | + | − |
| | U | + | + | + | + | − | + | + | + | − | + | − |
| | F | − | − | + | + | − | + | + | + | + | + | + |
| | U | − | − | + | + | − | + | + | + | + | + | + |
PCC—Number in Pasteur Culture Collection. F—filamentous species; U—unicellulae species.
An updated classification of cyanobacteria on the basis of their fatty acid composition.
| Organism | Fatty Acids | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| 14:0 | 14:1 | 16:0 | 16:1 | 16:2 e | 18:0 | 18:1 | 18:2 | α18:3 | γ18:3 | 18:4 | |
| Δ9 | Δ9 | Δ9,12 | Δ9 | Δ9,12 | Δ9,12,15 | Δ6,9,12 | Δ6,9,12,15 | ||||
| | − | − | + | + | − | + | + | − | − | − | − |
| | − | − | + | + | − | + | + | − | − | − | − |
| | − | − | + | + | − | + | + | − | − | − | − |
| | + | + | + | + | − | + | + | − | − | − | − |
| | − | − | + | + | − | + | + | − | − | − | − |
| | + | + | + | + | − | + | + | − | − | − | − |
| | − | − | + | + | − | + | + | − | − | − | − |
| | − | − | + | + | + | + | + | + | − | − | − |
| | − | − | + | + | − | + | + | + | − | − | − |
| | + | + | + | + | + | + | + | + | − | − | − |
| | − | − | + | + | − | + | + | + | + | − | − |
| | − | − | + | + | − | + | + | + | + | − | − |
| | − | − | + | + | − | + | + | + | + | − | − |
| | − | − | + | + | − | + | + | + | + | − | |
| | − | − | + | + | − | + | + | + | + | − | − |
| | − | − | + | + | − | + | + | + | + | − | − |
| | + | − | + | + | − | + | + | + | − | + | − |
| | − | − | + | + | − | + | + | + | − | + | − |
| | − | − | + | + | + | + | + | + | − | + | − |
| | + | + | + | + | + | + | + | + | + | + | + |
| | − | − | + | + | − | + | + | + | + | + | + |
| | − | − | + | + | − | + | + | + | + | + | + |
| | − | − | + | + | − | + | + | + | + | + | + |
a Number in Pasteur Culture Collection (PCC); b Number in the Collection of Microalgae and Cyanobacteria of the Institute of Plant Physiology RAS (IPPAS); c Prochlorococcus strains NATL1A, MIT 9211, MIT 9301, MIT 9303, MIT 9312, MIT 9313, MIT 9515, AS9601, CCMP1375, CCMP1986, etc; d Marine species of Synechococcus: strains BL107, CC9311, CC9605, CC9902, RCC307, RS9917, WH5701, WH7805, WH8102, etc.; e Prochlorothrix hollandica was reported to have ∆9- and ∆4-desaturase activities [22]; f At least, 9 species of Anabaena were studied [23].
Figure 1Alignment of partial amino acid sequences of the acyl-lipid fatty acid Δ9-desaturases from different cyanobacteria. The desaturases are clustered into three types of enzymes, DesC1, DesC2, and DesC3, according to their amino acid and functional features. Four conservative histidine-containing domains are marked. Amino acids identical or similar in all three groups of the Δ9-desaturases are shown in green; amino acids identical in two groups of desaturases are shown in blue; amino acids, which are unique for one of the desaturase groups, are shown in orange.