Literature DB >> 19363032

Desaturases: emerging models for understanding functional diversification of diiron-containing enzymes.

John Shanklin1, Jodie E Guy, Girish Mishra, Ylva Lindqvist.   

Abstract

Desaturases and related enzymes perform O(2)-dependent dehydrogenations initiated at unactivated C-H groups with the use of a diiron active site. Determination of the long-sought oxidized desaturase crystal structure facilitated structural comparison of the active sites of disparate diiron enzymes. Experiments on the castor desaturase are discussed that provide experimental support for a hypothesized ancestral oxidase enzyme in the context of the evolution of the diiron enzyme diverse functionality. We also summarize recent analysis of a castor mutant desaturase that provides valuable insights into the relationship of proposed substrate-binding modes with respect to a range of catalytic outcomes.

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Year:  2009        PMID: 19363032      PMCID: PMC2707227          DOI: 10.1074/jbc.R900009200

Source DB:  PubMed          Journal:  J Biol Chem        ISSN: 0021-9258            Impact factor:   5.157


  44 in total

1.  Dioxygen Activation by Enzymes Containing Binuclear Non-Heme Iron Clusters.

Authors:  Bradley J. Wallar; John D. Lipscomb
Journal:  Chem Rev       Date:  1996-11-07       Impact factor: 60.622

2.  Water-dependent reactions of diiron(II) carboxylate complexes.

Authors:  Sungho Yoon; Stephen J Lippard
Journal:  J Am Chem Soc       Date:  2004-12-29       Impact factor: 15.419

3.  Crystal structure of a bacterial non-haem iron hydroxylase that catalyses the biological oxidation of methane.

Authors:  A C Rosenzweig; C A Frederick; S J Lippard; P Nordlund
Journal:  Nature       Date:  1993-12-09       Impact factor: 49.962

Review 4.  Structure and occurrence of unusual fatty acids in minor seed oils.

Authors:  R C Badami; K B Patil
Journal:  Prog Lipid Res       Date:  1980       Impact factor: 16.195

5.  Engineering delta 9-16:0-acyl carrier protein (ACP) desaturase specificity based on combinatorial saturation mutagenesis and logical redesign of the castor delta 9-18:0-ACP desaturase.

Authors:  E Whittle; J Shanklin
Journal:  J Biol Chem       Date:  2001-04-09       Impact factor: 5.157

6.  Azide and acetate complexes plus two iron-depleted crystal structures of the di-iron enzyme delta9 stearoyl-acyl carrier protein desaturase. Implications for oxygen activation and catalytic intermediates.

Authors:  Martin Moche; John Shanklin; Alokesh Ghoshal; Ylva Lindqvist
Journal:  J Biol Chem       Date:  2003-04-18       Impact factor: 5.157

7.  Correlating structure with function in bacterial multicomponent monooxygenases and related diiron proteins.

Authors:  Matthew H Sazinsky; Stephen J Lippard
Journal:  Acc Chem Res       Date:  2006-08       Impact factor: 22.384

8.  Revealing the catalytic potential of an acyl-ACP desaturase: tandem selective oxidation of saturated fatty acids.

Authors:  Edward J Whittle; Amy E Tremblay; Peter H Buist; John Shanklin
Journal:  Proc Natl Acad Sci U S A       Date:  2008-09-16       Impact factor: 11.205

9.  Eight histidine residues are catalytically essential in a membrane-associated iron enzyme, stearoyl-CoA desaturase, and are conserved in alkane hydroxylase and xylene monooxygenase.

Authors:  J Shanklin; E Whittle; B G Fox
Journal:  Biochemistry       Date:  1994-11-01       Impact factor: 3.162

10.  The OLE1 gene of Saccharomyces cerevisiae encodes the delta 9 fatty acid desaturase and can be functionally replaced by the rat stearoyl-CoA desaturase gene.

Authors:  J E Stukey; V M McDonough; C E Martin
Journal:  J Biol Chem       Date:  1990-11-25       Impact factor: 5.157

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  74 in total

1.  Structure and mechanism of the diiron benzoyl-coenzyme A epoxidase BoxB.

Authors:  Liv J Rather; Tobias Weinert; Ulrike Demmer; Eckhard Bill; Wael Ismail; Georg Fuchs; Ulrich Ermler
Journal:  J Biol Chem       Date:  2011-06-01       Impact factor: 5.157

2.  Use of structural phylogenetic networks for classification of the ferritin-like superfamily.

Authors:  Daniel Lundin; Anthony M Poole; Britt-Marie Sjöberg; Martin Högbom
Journal:  J Biol Chem       Date:  2012-04-25       Impact factor: 5.157

3.  Identification of the gene encoding alkylglycerol monooxygenase defines a third class of tetrahydrobiopterin-dependent enzymes.

Authors:  Katrin Watschinger; Markus A Keller; Georg Golderer; Martin Hermann; Manuel Maglione; Bettina Sarg; Herbert H Lindner; Albin Hermetter; Gabriele Werner-Felmayer; Robert Konrat; Nicolas Hulo; Ernst R Werner
Journal:  Proc Natl Acad Sci U S A       Date:  2010-07-19       Impact factor: 11.205

4.  A conserved evolutionary mechanism permits Δ9 desaturation of very-long-chain fatty acyl lipids.

Authors:  Yuanheng Cai; Xiao-Hong Yu; Jin Chai; Chang-Jun Liu; John Shanklin
Journal:  J Biol Chem       Date:  2020-06-11       Impact factor: 5.157

Review 5.  The front-end desaturase: structure, function, evolution and biotechnological use.

Authors:  Dauenpen Meesapyodsuk; Xiao Qiu
Journal:  Lipids       Date:  2011-10-19       Impact factor: 1.880

Review 6.  Chemistry of the retinoid (visual) cycle.

Authors:  Philip D Kiser; Marcin Golczak; Krzysztof Palczewski
Journal:  Chem Rev       Date:  2013-07-11       Impact factor: 60.622

7.  Substrate specificity and membrane topologies of the iron-containing ω3 and ω6 desaturases from Mortierella alpina.

Authors:  Mingxuan Wang; Haiqin Chen; Aisikaer Ailati; Wei Chen; Floyd H Chilton; W Todd Lowther; Yong Q Chen
Journal:  Appl Microbiol Biotechnol       Date:  2017-10-30       Impact factor: 4.813

8.  Two Distinct Mechanisms for C-C Desaturation by Iron(II)- and 2-(Oxo)glutarate-Dependent Oxygenases: Importance of α-Heteroatom Assistance.

Authors:  Noah P Dunham; Wei-Chen Chang; Andrew J Mitchell; Ryan J Martinie; Bo Zhang; Jonathan A Bergman; Lauren J Rajakovich; Bo Wang; Alexey Silakov; Carsten Krebs; Amie K Boal; J Martin Bollinger
Journal:  J Am Chem Soc       Date:  2018-06-04       Impact factor: 15.419

Review 9.  Expanding the enzyme universe: accessing non-natural reactions by mechanism-guided directed evolution.

Authors:  Hans Renata; Z Jane Wang; Frances H Arnold
Journal:  Angew Chem Int Ed Engl       Date:  2015-02-03       Impact factor: 15.336

Review 10.  Dioxygen Activation by Nonheme Diiron Enzymes: Diverse Dioxygen Adducts, High-Valent Intermediates, and Related Model Complexes.

Authors:  Andrew J Jasniewski; Lawrence Que
Journal:  Chem Rev       Date:  2018-02-05       Impact factor: 60.622

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