Literature DB >> 25801030

Conversion of MyoD to a neurogenic factor: binding site specificity determines lineage.

Abraham P Fong1, Zizhen Yao2, Jun Wen Zhong2, Nathan M Johnson3, Gist H Farr3, Lisa Maves4, Stephen J Tapscott5.   

Abstract

MyoD and NeuroD2, master regulators of myogenesis and neurogenesis, bind to a "shared" E-box sequence (CAGCTG) and a "private" sequence (CAGGTG or CAGATG, respectively). To determine whether private-site recognition is sufficient to confer lineage specification, we generated a MyoD mutant with the DNA-binding specificity of NeuroD2. This chimeric mutant gained binding to NeuroD2 private sites but maintained binding to a subset of MyoD-specific sites, activating part of both the muscle and neuronal programs. Sequence analysis revealed an enrichment for PBX/MEIS motifs at the subset of MyoD-specific sites bound by the chimera, and point mutations that prevent MyoD interaction with PBX/MEIS converted the chimera to a pure neurogenic factor. Therefore, redirecting MyoD binding from MyoD private sites to NeuroD2 private sites, despite preserved binding to the MyoD/NeuroD2 shared sites, is sufficient to change MyoD from a master regulator of myogenesis to a master regulator of neurogenesis.
Copyright © 2015 The Authors. Published by Elsevier Inc. All rights reserved.

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Year:  2015        PMID: 25801030      PMCID: PMC4683018          DOI: 10.1016/j.celrep.2015.02.055

Source DB:  PubMed          Journal:  Cell Rep            Impact factor:   9.423


  29 in total

1.  Immunocytochemistry to study myogenesis in zebrafish.

Authors:  Nathan C Bird; Stefanie E Windner; Stephen H Devoto
Journal:  Methods Mol Biol       Date:  2012

2.  Using GOstats to test gene lists for GO term association.

Authors:  S Falcon; R Gentleman
Journal:  Bioinformatics       Date:  2006-11-10       Impact factor: 6.937

3.  Genome-wide MyoD binding in skeletal muscle cells: a potential for broad cellular reprogramming.

Authors:  Yi Cao; Zizhen Yao; Deepayan Sarkar; Michael Lawrence; Gilson J Sanchez; Maura H Parker; Kyle L MacQuarrie; Jerry Davison; Martin T Morgan; Walter L Ruzzo; Robert C Gentleman; Stephen J Tapscott
Journal:  Dev Cell       Date:  2010-04-20       Impact factor: 12.270

4.  Crystal structure of E47-NeuroD1/beta2 bHLH domain-DNA complex: heterodimer selectivity and DNA recognition.

Authors:  Antonella Longo; Gerald P Guanga; Robert B Rose
Journal:  Biochemistry       Date:  2007-12-11       Impact factor: 3.162

5.  Cdkn1c drives muscle differentiation through a positive feedback loop with Myod.

Authors:  Daniel P S Osborn; Kuoyu Li; Yaniv Hinits; Simon M Hughes
Journal:  Dev Biol       Date:  2010-12-11       Impact factor: 3.582

6.  Differential genomic targeting of the transcription factor TAL1 in alternate haematopoietic lineages.

Authors:  Carmen G Palii; Carolina Perez-Iratxeta; Zizhen Yao; Yi Cao; Fengtao Dai; Jerry Davison; Harold Atkins; David Allan; F Jeffrey Dilworth; Robert Gentleman; Stephen J Tapscott; Marjorie Brand
Journal:  EMBO J       Date:  2010-12-21       Impact factor: 11.598

7.  Differential expression analysis for sequence count data.

Authors:  Simon Anders; Wolfgang Huber
Journal:  Genome Biol       Date:  2010-10-27       Impact factor: 13.583

8.  Quantifying similarity between motifs.

Authors:  Shobhit Gupta; John A Stamatoyannopoulos; Timothy L Bailey; William Stafford Noble
Journal:  Genome Biol       Date:  2007       Impact factor: 13.583

9.  Direct conversion of fibroblasts to functional neurons by defined factors.

Authors:  Thomas Vierbuchen; Austin Ostermeier; Zhiping P Pang; Yuko Kokubu; Thomas C Südhof; Marius Wernig
Journal:  Nature       Date:  2010-01-27       Impact factor: 49.962

10.  Prdm1- and Sox6-mediated transcriptional repression specifies muscle fibre type in the zebrafish embryo.

Authors:  Jonas von Hofsten; Stone Elworthy; Michael J Gilchrist; James C Smith; Fiona C Wardle; Philip W Ingham
Journal:  EMBO Rep       Date:  2008-06-06       Impact factor: 8.807

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  26 in total

Review 1.  Shaping Gene Expression by Landscaping Chromatin Architecture: Lessons from a Master.

Authors:  Vittorio Sartorelli; Pier Lorenzo Puri
Journal:  Mol Cell       Date:  2018-06-07       Impact factor: 17.970

2.  Rapid Chromatin Switch in the Direct Reprogramming of Fibroblasts to Neurons.

Authors:  Orly L Wapinski; Qian Yi Lee; Albert C Chen; Rui Li; M Ryan Corces; Cheen Euong Ang; Barbara Treutlein; Chaomei Xiang; Valérie Baubet; Fabian Patrik Suchy; Venkat Sankar; Sopheak Sim; Stephen R Quake; Nadia Dahmane; Marius Wernig; Howard Y Chang
Journal:  Cell Rep       Date:  2017-09-26       Impact factor: 9.423

3.  Identification of Human Lineage-Specific Transcriptional Coregulators Enabled by a Glossary of Binding Modules and Tunable Genomic Backgrounds.

Authors:  Luca Mariani; Kathryn Weinand; Anastasia Vedenko; Luis A Barrera; Martha L Bulyk
Journal:  Cell Syst       Date:  2017-09-27       Impact factor: 10.304

4.  Homotypic cooperativity and collective binding are determinants of bHLH specificity and function.

Authors:  Christian A Shively; Jiayue Liu; Xuhua Chen; Kaiser Loell; Robi D Mitra
Journal:  Proc Natl Acad Sci U S A       Date:  2019-07-24       Impact factor: 11.205

5.  Quantitative analysis of transcription factor binding and expression using calling cards reporter arrays.

Authors:  Jiayue Liu; Christian A Shively; Robi D Mitra
Journal:  Nucleic Acids Res       Date:  2020-05-21       Impact factor: 16.971

6.  Distinct Activities of Myf5 and MyoD Indicate Separate Roles in Skeletal Muscle Lineage Specification and Differentiation.

Authors:  Melissa L Conerly; Zizhen Yao; Jun Wen Zhong; Mark Groudine; Stephen J Tapscott
Journal:  Dev Cell       Date:  2016-02-22       Impact factor: 12.270

7.  Impact of Reck expression and promoter activity in neuronal in vitro differentiation.

Authors:  Marina Trombetta-Lima; Thais Assis-Ribas; Ricardo C Cintra; Joana D Campeiro; Juliano R Guerreiro; Sheila M B Winnischofer; Isis C C Nascimento; Henning Ulrich; Mirian A F Hayashi; Mari C Sogayar
Journal:  Mol Biol Rep       Date:  2021-02-22       Impact factor: 2.316

8.  The Histone Variant MacroH2A1.2 Is Necessary for the Activation of Muscle Enhancers and Recruitment of the Transcription Factor Pbx1.

Authors:  Stefania Dell'Orso; A Hongjun Wang; Han-Yu Shih; Kayoko Saso; Libera Berghella; Gustavo Gutierrez-Cruz; Andreas G Ladurner; John J O'Shea; Vittorio Sartorelli; Hossein Zare
Journal:  Cell Rep       Date:  2016-01-28       Impact factor: 9.423

9.  Pro-neuronal activity of Myod1 due to promiscuous binding to neuronal genes.

Authors:  Qian Yi Lee; Moritz Mall; Soham Chanda; Bo Zhou; Kylesh S Sharma; Katie Schaukowitch; Juan M Adrian-Segarra; Sarah D Grieder; Michael S Kareta; Orly L Wapinski; Cheen Euong Ang; Rui Li; Thomas C Südhof; Howard Y Chang; Marius Wernig
Journal:  Nat Cell Biol       Date:  2020-03-30       Impact factor: 28.213

10.  Pbx4 is Required for the Temporal Onset of Zebrafish Myocardial Differentiation.

Authors:  Robert M Kao; Joel G Rurik; Gist H Farr; Xiu Rong Dong; Mark W Majesky; Lisa Maves
Journal:  J Dev Biol       Date:  2015
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