Literature DB >> 25776990

Long noncoding RNAs: a potent source of regulation in immunity and disease.

Albert D Yu1, Zichen Wang1, Kevin V Morris2.   

Abstract

The discovery of functional long noncoding RNAs (lncRNAs) coupled with the ever-increasing accessibility of genomic and transcriptomic technology has led to an explosion of functional and mechanistic investigation and discovery into what was once dismissed as junk DNA. Over the past decade, a significant number of lncRNAs have been found to be involved in a diverse array of processes: from epigenetic modulation, both repressive and activating; to protein scaffolding; to miRNA sequestration; to competitive inhibition; and more. The broad character of these mechanisms means that lncRNAs have the potential for regulation across all biological processes-not least of which are immunity and disease. A number of lncRNAs operating within these two contexts have already been identified and characterized, but untold more remain yet to be discovered. This review aims to provide an overview of the current state of research on lncRNAs involved in immune modulation and disease, with an emphasis on their mechanism and discovery.

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Year:  2015        PMID: 25776990     DOI: 10.1038/icb.2015.2

Source DB:  PubMed          Journal:  Immunol Cell Biol        ISSN: 0818-9641            Impact factor:   5.126


  54 in total

1.  A highly structured, nuclease-resistant, noncoding RNA produced by flaviviruses is required for pathogenicity.

Authors:  Gorben P Pijlman; Anneke Funk; Natasha Kondratieva; Jason Leung; Shessy Torres; Lieke van der Aa; Wen Jun Liu; Ann C Palmenberg; Pei-Yong Shi; Roy A Hall; Alexander A Khromykh
Journal:  Cell Host Microbe       Date:  2008-12-11       Impact factor: 21.023

2.  Molecular characterization of virus-specific RNA produced in the brains of flavivirus-susceptible and -resistant mice after challenge with Murray Valley encephalitis virus.

Authors:  N Urosevic; M van Maanen; J P Mansfield; J S Mackenzie; G R Shellam
Journal:  J Gen Virol       Date:  1997-01       Impact factor: 3.891

3.  HELLP babies link a novel lincRNA to the trophoblast cell cycle.

Authors:  Marie van Dijk; Hari K Thulluru; Joyce Mulders; Omar J Michel; Ankie Poutsma; Sandra Windhorst; Gunilla Kleiverda; Daoud Sie; Augusta M A Lachmeijer; Cees B M Oudejans
Journal:  J Clin Invest       Date:  2012-10-24       Impact factor: 14.808

4.  A long noncoding RNA maintains active chromatin to coordinate homeotic gene expression.

Authors:  Kevin C Wang; Yul W Yang; Bo Liu; Amartya Sanyal; Ryan Corces-Zimmerman; Yong Chen; Bryan R Lajoie; Angeline Protacio; Ryan A Flynn; Rajnish A Gupta; Joanna Wysocka; Ming Lei; Job Dekker; Jill A Helms; Howard Y Chang
Journal:  Nature       Date:  2011-03-20       Impact factor: 49.962

5.  Identification and characterization of a virus-inducible non-coding RNA in mouse brain.

Authors:  Sougata Saha; Sreenivasa Murthy; Pundi N Rangarajan
Journal:  J Gen Virol       Date:  2006-07       Impact factor: 3.891

6.  Noncoding RNA gas5 is a growth arrest- and starvation-associated repressor of the glucocorticoid receptor.

Authors:  Tomoshige Kino; Darrell E Hurt; Takamasa Ichijo; Nancy Nader; George P Chrousos
Journal:  Sci Signal       Date:  2010-02-02       Impact factor: 8.192

7.  An architectural role for a nuclear noncoding RNA: NEAT1 RNA is essential for the structure of paraspeckles.

Authors:  Christine M Clemson; John N Hutchinson; Sergio A Sara; Alexander W Ensminger; Archa H Fox; Andrew Chess; Jeanne B Lawrence
Journal:  Mol Cell       Date:  2009-02-12       Impact factor: 17.970

8.  Long non-coding RNAs and enhancer RNAs regulate the lipopolysaccharide-induced inflammatory response in human monocytes.

Authors:  Nicholas E IIott; James A Heward; Benoit Roux; Eleni Tsitsiou; Peter S Fenwick; Luca Lenzi; Ian Goodhead; Christiane Hertz-Fowler; Andreas Heger; Neil Hall; Louise E Donnelly; David Sims; Mark A Lindsay
Journal:  Nat Commun       Date:  2014-06-09       Impact factor: 17.694

9.  p50-associated COX-2 extragenic RNA (PACER) activates COX-2 gene expression by occluding repressive NF-κB complexes.

Authors:  Michal Krawczyk; Beverly M Emerson
Journal:  Elife       Date:  2014-04-29       Impact factor: 8.140

10.  The structural basis of pathogenic subgenomic flavivirus RNA (sfRNA) production.

Authors:  Erich G Chapman; David A Costantino; Jennifer L Rabe; Stephanie L Moon; Jeffrey Wilusz; Jay C Nix; Jeffrey S Kieft
Journal:  Science       Date:  2014-04-18       Impact factor: 47.728

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  27 in total

1.  Host-directed drug therapy for tuberculosis.

Authors:  Reto Guler; Frank Brombacher
Journal:  Nat Chem Biol       Date:  2015-10       Impact factor: 15.040

Review 2.  Role of long non-coding RNAs (LncRNAs) in multiple sclerosis: a brief review.

Authors:  Eskandar Taghizadeh; Forough Taheri; Mohammad Mahdi Samadian; Mohammad Soudyab; Abbas Abi; Seyed Mohammad Gheibi Hayat
Journal:  Neurol Sci       Date:  2020-04-30       Impact factor: 3.307

3.  The epigenetic mechanisms that underlie health and disease.

Authors:  Rhys S Allan
Journal:  Immunol Cell Biol       Date:  2015-03       Impact factor: 5.126

4.  Reproductive Long Intergenic Noncoding RNAs Exhibit Male Gamete Specificity and Polycomb Repressive Complex 2-Mediated Repression.

Authors:  Cameron Johnson; Liza J Conrad; Ravi Patel; Sarah Anderson; Chenxin Li; Andy Pereira; Venkatesan Sundaresan
Journal:  Plant Physiol       Date:  2018-05-29       Impact factor: 8.340

Review 5.  Protein sequestration as a normal function of long noncoding RNAs and a pathogenic mechanism of RNAs containing nucleotide repeat expansions.

Authors:  Ginny R Morriss; Thomas A Cooper
Journal:  Hum Genet       Date:  2017-05-08       Impact factor: 4.132

Review 6.  Biogenesis and Transcriptional Regulation of Long Noncoding RNAs in the Human Immune System.

Authors:  Charles F Spurlock; Philip S Crooke; Thomas M Aune
Journal:  J Immunol       Date:  2016-12-15       Impact factor: 5.422

7.  An Immune-Related lncRNA Signature to Predict the Biochemical Recurrence and Immune Landscape in Prostate Cancer.

Authors:  Guian Zhang; Yong Luo
Journal:  Int J Gen Med       Date:  2021-11-30

8.  Identification and characterization of novel infection associated transcripts in macrophages.

Authors:  Prabhakar Arumugam; Mohit Singla; Rakesh Lodha; Vivek Rao
Journal:  RNA Biol       Date:  2021-11-08       Impact factor: 4.652

9.  Upregulation of LINC-AP2 is negatively correlated with AP2 gene expression with Turnip crinkle virus infection in Arabidopsis thaliana.

Authors:  Ruimin Gao; Peng Liu; Nadia Irwanto; De Rong Loh; Sek-Man Wong
Journal:  Plant Cell Rep       Date:  2016-07-29       Impact factor: 4.570

Review 10.  Angiogenesis-related non-coding RNAs and gastrointestinal cancer.

Authors:  Zahra Sadat Razavi; Kasra Asgarpour; Maryam Mahjoubin-Tehran; Susan Rasouli; Haroon Khan; Mohammad Karim Shahrzad; Michael R Hamblin; Hamed Mirzaei
Journal:  Mol Ther Oncolytics       Date:  2021-05-15       Impact factor: 7.200

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