Literature DB >> 28484853

Protein sequestration as a normal function of long noncoding RNAs and a pathogenic mechanism of RNAs containing nucleotide repeat expansions.

Ginny R Morriss1, Thomas A Cooper2,3,4.   

Abstract

An emerging class of long noncoding RNAs (lncRNAs) function as decoy molecules that bind and sequester proteins thereby inhibiting their normal functions. Titration of proteins by lncRNAs has wide-ranging effects affecting nearly all steps in gene expression. While decoy lncRNAs play a role in normal physiology, RNAs expressed from alleles containing nucleotide repeat expansions can be pathogenic due to protein sequestration resulting in disruption of normal functions. This review focuses on commonalities between decoy lncRNAs that regulate gene expression by competitive inhibition of protein function through sequestration and specific examples of nucleotide repeat expansion disorders mediated by toxic RNA that sequesters RNA-binding proteins and impedes their normal functions. Understanding how noncoding RNAs compete with various RNA and DNA molecules for binding of regulatory proteins will provide insight into how similar mechanisms contribute to disease pathogenesis.

Entities:  

Keywords:  Amyotrophic Lateral Sclerosis; Antisense Transcript; CELF1 Protein; Glucocorticoid Receptor; Myotonic Dystrophy Type

Mesh:

Substances:

Year:  2017        PMID: 28484853      PMCID: PMC5677592          DOI: 10.1007/s00439-017-1807-6

Source DB:  PubMed          Journal:  Hum Genet        ISSN: 0340-6717            Impact factor:   4.132


  156 in total

1.  Characteristic RNA foci of the abnormal hexanucleotide GGCCUG repeat expansion in spinocerebellar ataxia type 36 (Asidan).

Authors:  W Liu; Y Ikeda; N Hishikawa; T Yamashita; K Deguchi; K Abe
Journal:  Eur J Neurol       Date:  2014-07-02       Impact factor: 6.089

Review 2.  Myotonic dystrophy: disease repeat range, penetrance, age of onset, and relationship between repeat size and phenotypes.

Authors:  Kevin Yum; Eric T Wang; Auinash Kalsotra
Journal:  Curr Opin Genet Dev       Date:  2017-02-14       Impact factor: 5.578

3.  Recruitment of human muscleblind proteins to (CUG)(n) expansions associated with myotonic dystrophy.

Authors:  J W Miller; C R Urbinati; P Teng-Umnuay; M G Stenberg; B J Byrne; C A Thornton; M S Swanson
Journal:  EMBO J       Date:  2000-09-01       Impact factor: 11.598

4.  Huntington's disease--like 2 is associated with CUG repeat-containing RNA foci.

Authors:  Dobrila D Rudnicki; Susan E Holmes; Mark W Lin; Charles A Thornton; Christopher A Ross; Russell L Margolis
Journal:  Ann Neurol       Date:  2007-03       Impact factor: 10.422

5.  Transcriptome-wide regulation of pre-mRNA splicing and mRNA localization by muscleblind proteins.

Authors:  Eric T Wang; Neal A L Cody; Sonali Jog; Michela Biancolella; Thomas T Wang; Daniel J Treacy; Shujun Luo; Gary P Schroth; David E Housman; Sita Reddy; Eric Lécuyer; Christopher B Burge
Journal:  Cell       Date:  2012-08-17       Impact factor: 41.582

Review 6.  The FMR1 gene and fragile X-associated tremor/ataxia syndrome.

Authors:  J R Brouwer; R Willemsen; B A Oostra
Journal:  Am J Med Genet B Neuropsychiatr Genet       Date:  2009-09-05       Impact factor: 3.568

7.  Pur alpha binds to rCGG repeats and modulates repeat-mediated neurodegeneration in a Drosophila model of fragile X tremor/ataxia syndrome.

Authors:  Peng Jin; Ranhui Duan; Abrar Qurashi; Yunlong Qin; Donghua Tian; Tracie C Rosser; Huijie Liu; Yue Feng; Stephen T Warren
Journal:  Neuron       Date:  2007-08-16       Impact factor: 17.173

8.  p50-associated COX-2 extragenic RNA (PACER) activates COX-2 gene expression by occluding repressive NF-κB complexes.

Authors:  Michal Krawczyk; Beverly M Emerson
Journal:  Elife       Date:  2014-04-29       Impact factor: 8.140

9.  The hormone response element mimic sequence of GAS5 lncRNA is sufficient to induce apoptosis in breast cancer cells.

Authors:  Mark R Pickard; Gwyn T Williams
Journal:  Oncotarget       Date:  2016-03-01

Review 10.  Repeat-associated non-ATG (RAN) translation in neurological disease.

Authors:  John D Cleary; Laura P W Ranum
Journal:  Hum Mol Genet       Date:  2013-08-04       Impact factor: 6.150

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  11 in total

1.  A Short Tandem Repeat-Enriched RNA Assembles a Nuclear Compartment to Control Alternative Splicing and Promote Cell Survival.

Authors:  Karen Yap; Svetlana Mukhina; Gen Zhang; Jason S C Tan; Hong Sheng Ong; Eugene V Makeyev
Journal:  Mol Cell       Date:  2018-10-11       Impact factor: 17.970

Review 2.  Potential Therapeutics Targeting Upstream Regulators and Interactors of EHMT1/2.

Authors:  Gareth Chin Khye Ang; Amogh Gupta; Uttam Surana; Shirlyn Xue Ling Yap; Reshma Taneja
Journal:  Cancers (Basel)       Date:  2022-06-09       Impact factor: 6.575

Review 3.  RNA-binding proteins in neurodegeneration: mechanisms in aggregate.

Authors:  Erin G Conlon; James L Manley
Journal:  Genes Dev       Date:  2017-08-01       Impact factor: 11.361

Review 4.  Importance of Long Non-coding RNAs in the Development and Disease of Skeletal Muscle and Cardiovascular Lineages.

Authors:  Sweta Sweta; Tatiana Dudnakova; Smita Sudheer; Andrew H Baker; Raghu Bhushan
Journal:  Front Cell Dev Biol       Date:  2019-10-18

Review 5.  Trinucleotide CGG Repeat Diseases: An Expanding Field of Polyglycine Proteins?

Authors:  Manon Boivin; Nicolas Charlet-Berguerand
Journal:  Front Genet       Date:  2022-02-28       Impact factor: 4.599

Review 6.  Overlapping mechanisms of lncRNA and expanded microsatellite RNA.

Authors:  Sara J Johnson; Thomas A Cooper
Journal:  Wiley Interdiscip Rev RNA       Date:  2020-11-16       Impact factor: 9.957

Review 7.  Epigenetic Regulation of the Epithelial to Mesenchymal Transition in Lung Cancer.

Authors:  Joëlle Roche; Robert M Gemmill; Harry A Drabkin
Journal:  Cancers (Basel)       Date:  2017-06-24       Impact factor: 6.639

8.  Dysregulation of RNA-Binding Proteins in Amyotrophic Lateral Sclerosis.

Authors:  Yuan Chao Xue; Chen Seng Ng; Pinhao Xiang; Huitao Liu; Kevin Zhang; Yasir Mohamud; Honglin Luo
Journal:  Front Mol Neurosci       Date:  2020-05-29       Impact factor: 5.639

9.  A potential role of extended simple sequence repeats in competing endogenous RNA crosstalk.

Authors:  Tomasz M Witkos; Wlodzimierz J Krzyzosiak; Agnieszka Fiszer; Edyta Koscianska
Journal:  RNA Biol       Date:  2018-11-05       Impact factor: 4.652

Review 10.  Molecular Mechanisms in Pentanucleotide Repeat Diseases.

Authors:  Joana R Loureiro; Ana F Castro; Ana S Figueiredo; Isabel Silveira
Journal:  Cells       Date:  2022-01-08       Impact factor: 6.600

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