Literature DB >> 27913643

Biogenesis and Transcriptional Regulation of Long Noncoding RNAs in the Human Immune System.

Charles F Spurlock1, Philip S Crooke2, Thomas M Aune3.   

Abstract

The central dogma of molecular biology states that DNA makes RNA makes protein. Discoveries over the last quarter of a century found that the process of DNA transcription into RNA gives rise to a diverse array of functional RNA species, including genes that code for protein and noncoding RNAs. For decades, the focus has been on understanding how protein-coding genes are regulated to influence protein expression. However, with the completion of the Human Genome Project and follow-up ENCODE data, it is now appreciated that only 2-3% of the genome codes for protein-coding gene exons and that the bulk of the transcribed genome, apart from ribosomal RNAs, is at the level of noncoding RNA genes. In this article, we focus on the biogenesis and regulation of a distinct class of noncoding RNA molecules termed long, noncoding RNAs in the context of the immune system.
Copyright © 2016 by The American Association of Immunologists, Inc.

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Year:  2016        PMID: 27913643      PMCID: PMC5140008          DOI: 10.4049/jimmunol.1600970

Source DB:  PubMed          Journal:  J Immunol        ISSN: 0022-1767            Impact factor:   5.422


  92 in total

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Review 2.  Unique features of long non-coding RNA biogenesis and function.

Authors:  Jeffrey J Quinn; Howard Y Chang
Journal:  Nat Rev Genet       Date:  2016-01       Impact factor: 53.242

Review 3.  Molecular mechanisms of long noncoding RNAs.

Authors:  Kevin C Wang; Howard Y Chang
Journal:  Mol Cell       Date:  2011-09-16       Impact factor: 17.970

Review 4.  Long antisense non-coding RNAs and the epigenetic regulation of gene expression.

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Journal:  Biomol Concepts       Date:  2013-08

5.  Super-enhancers in the control of cell identity and disease.

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Journal:  Cell       Date:  2013-10-10       Impact factor: 41.582

Review 6.  Towards an understanding of cell-specific functions of signal-dependent transcription factors.

Authors:  Dawn X Zhang; Christopher K Glass
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7.  The reality of pervasive transcription.

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9.  NEAT1 long noncoding RNA and paraspeckle bodies modulate HIV-1 posttranscriptional expression.

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10.  CPAT: Coding-Potential Assessment Tool using an alignment-free logistic regression model.

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  17 in total

Review 1.  Emerging role of lncRNAs in the normal and diseased intestinal barrier.

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2.  Identification and characterization of novel infection associated transcripts in macrophages.

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Journal:  RNA Biol       Date:  2021-11-08       Impact factor: 4.652

Review 3.  Regulation of long non-coding RNAs and genome dynamics by the RNA surveillance machinery.

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Review 5.  Impact of Toxoplasma gondii Infection on Host Non-coding RNA Responses.

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Review 6.  Long Noncoding RNA HCP5, a Hybrid HLA Class I Endogenous Retroviral Gene: Structure, Expression, and Disease Associations.

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7.  Long noncoding RNAs and their roles in skeletal muscle fate determination.

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Review 8.  Angiogenesis-related non-coding RNAs and gastrointestinal cancer.

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9.  Integrated analysis profiles of long non-coding RNAs reveal potential biomarkers of drug resistance in lung cancer.

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10.  Toxoplasma gondii Manipulates Expression of Host Long Noncoding RNA during Intracellular Infection.

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