Literature DB >> 25773944

Potential clinical utility of ultrasensitive circulating tumor DNA detection with CAPP-Seq.

Scott V Bratman1, Aaron M Newman, Ash A Alizadeh, Maximilian Diehn.   

Abstract

Tumors continually shed DNA into the circulation, where it can be noninvasively accessed. The ability to accurately detect circulating tumor DNA (ctDNA) could significantly impact the management of patients with nearly every cancer type. Quantitation of ctDNA could allow objective response assessment, detection of minimal residual disease and noninvasive tumor genotyping. The latter application overcomes the barriers currently limiting repeated tumor tissue sampling during therapy. Recent technical advancements have improved upon the sensitivity, specificity and feasibility of ctDNA detection and promise to enable innovative clinical applications. Here, we focus on the potential clinical utility of ctDNA analysis using CAncer Personalized Profiling by deep Sequencing (CAPP-Seq), a novel next-generation sequencing-based approach for ultrasensitive ctDNA detection. Applications of CAPP-Seq for the personalization of cancer detection and therapy are discussed.

Entities:  

Keywords:  biomarker; circulating tumor DNA; next-generation sequencing; noninvasive; ultrasensitive

Mesh:

Substances:

Year:  2015        PMID: 25773944      PMCID: PMC5052032          DOI: 10.1586/14737159.2015.1019476

Source DB:  PubMed          Journal:  Expert Rev Mol Diagn        ISSN: 1473-7159            Impact factor:   5.225


  27 in total

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Journal:  Sci Transl Med       Date:  2012-05-30       Impact factor: 17.956

4.  Scale to predict survival after surgery for recurrent glioblastoma multiforme.

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5.  Circulating tumor DNA--ready for prime time?

Authors:  Marc Lippman; C Kent Osborne
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Journal:  J Clin Oncol       Date:  1999-02       Impact factor: 44.544

7.  Comparison of the prognostic value of assessing tumor diameter versus tumor volume at diagnosis or in response to initial chemotherapy in rhabdomyosarcoma.

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Journal:  J Clin Oncol       Date:  2010-02-01       Impact factor: 44.544

8.  Detection of circulating tumor DNA in early- and late-stage human malignancies.

Authors:  Chetan Bettegowda; Mark Sausen; Rebecca J Leary; Isaac Kinde; Yuxuan Wang; Nishant Agrawal; Bjarne R Bartlett; Hao Wang; Brandon Luber; Rhoda M Alani; Emmanuel S Antonarakis; Nilofer S Azad; Alberto Bardelli; Henry Brem; John L Cameron; Clarence C Lee; Leslie A Fecher; Gary L Gallia; Peter Gibbs; Dung Le; Robert L Giuntoli; Michael Goggins; Michael D Hogarty; Matthias Holdhoff; Seung-Mo Hong; Yuchen Jiao; Hartmut H Juhl; Jenny J Kim; Giulia Siravegna; Daniel A Laheru; Calogero Lauricella; Michael Lim; Evan J Lipson; Suely Kazue Nagahashi Marie; George J Netto; Kelly S Oliner; Alessandro Olivi; Louise Olsson; Gregory J Riggins; Andrea Sartore-Bianchi; Kerstin Schmidt; le-Ming Shih; Sueli Mieko Oba-Shinjo; Salvatore Siena; Dan Theodorescu; Jeanne Tie; Timothy T Harkins; Silvio Veronese; Tian-Li Wang; Jon D Weingart; Christopher L Wolfgang; Laura D Wood; Dongmei Xing; Ralph H Hruban; Jian Wu; Peter J Allen; C Max Schmidt; Michael A Choti; Victor E Velculescu; Kenneth W Kinzler; Bert Vogelstein; Nickolas Papadopoulos; Luis A Diaz
Journal:  Sci Transl Med       Date:  2014-02-19       Impact factor: 17.956

9.  Circulating mutant DNA to assess tumor dynamics.

Authors:  Frank Diehl; Kerstin Schmidt; Michael A Choti; Katharine Romans; Steven Goodman; Meng Li; Katherine Thornton; Nishant Agrawal; Lori Sokoll; Steve A Szabo; Kenneth W Kinzler; Bert Vogelstein; Luis A Diaz
Journal:  Nat Med       Date:  2007-07-31       Impact factor: 53.440

10.  Ultrasensitive measurement of hotspot mutations in tumor DNA in blood using error-suppressed multiplexed deep sequencing.

Authors:  Azeet Narayan; Nicholas J Carriero; Scott N Gettinger; Jeannie Kluytenaar; Kevin R Kozak; Torunn I Yock; Nicole E Muscato; Pedro Ugarelli; Roy H Decker; Abhijit A Patel
Journal:  Cancer Res       Date:  2012-05-10       Impact factor: 12.701

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  33 in total

1.  Circulating Tumour DNA as a Potential Cost-Effective Biomarker to Reduce Adjuvant Chemotherapy Overtreatment in Stage II Colorectal Cancer.

Authors:  Yat Hang To; Koen Degeling; Suzanne Kosmider; Rachel Wong; Margaret Lee; Catherine Dunn; Grace Gard; Azim Jalali; Vanessa Wong; Maarten IJzerman; Peter Gibbs; Jeanne Tie
Journal:  Pharmacoeconomics       Date:  2021-06-05       Impact factor: 4.981

Review 2.  Detection of Solid Tumor Molecular Residual Disease (MRD) Using Circulating Tumor DNA (ctDNA).

Authors:  Re-I Chin; Kevin Chen; Abul Usmani; Chanelle Chua; Peter K Harris; Michael S Binkley; Tej D Azad; Jonathan C Dudley; Aadel A Chaudhuri
Journal:  Mol Diagn Ther       Date:  2019-06       Impact factor: 4.074

3.  Circulating tumour DNA in early stage colorectal cancer: can blood tell all?

Authors:  Yat Hang To; Margaret Lee; Peter Gibbs; Jeanne Tie
Journal:  Ann Transl Med       Date:  2019-12

4.  Detection of Rare Mutations in CtDNA Using Next Generation Sequencing.

Authors:  Xiaoxing Lv; Meiru Zhao; Yuting Yi; Lucheng Zhang; Yanfang Guan; Tao Liu; Ling Yang; Rongrong Chen; Jianhui Ma; Xin Yi
Journal:  J Vis Exp       Date:  2017-08-24       Impact factor: 1.355

5.  Bisulfite-converted duplexes for the strand-specific detection and quantification of rare mutations.

Authors:  Austin K Mattox; Yuxuan Wang; Simeon Springer; Joshua D Cohen; Srinivasan Yegnasubramanian; William G Nelson; Kenneth W Kinzler; Bert Vogelstein; Nickolas Papadopoulos
Journal:  Proc Natl Acad Sci U S A       Date:  2017-04-17       Impact factor: 11.205

6.  Immunoglobulin/T Cell Receptor Capture Strategy for Comprehensive Immunogenetics.

Authors:  James Peter Stewart; Jana Gazdova; Shambhavi Srivastava; Julia Revolta; Louise Harewood; Manisha Maurya; Nikos Darzentas; David Gonzalez
Journal:  Methods Mol Biol       Date:  2022

7.  Detection of Circulating Tumor DNA in Plasma: A Potential Biomarker for Esophageal Adenocarcinoma.

Authors:  Matthew Egyud; Mohamedtaki Tejani; Arjun Pennathur; James Luketich; Praveen Sridhar; Emiko Yamada; Anders Ståhlberg; Stefan Filges; Paul Krzyzanowski; Jennifer Jackson; Irina Kalatskaya; Wei Jiao; Gradon Nielsen; Zhongren Zhou; Virginia Litle; Lincoln Stein; Tony Godfrey
Journal:  Ann Thorac Surg       Date:  2019-05-03       Impact factor: 4.330

Review 8.  Molecular diagnostics of lung cancer in the clinic.

Authors:  Lynette Sholl
Journal:  Transl Lung Cancer Res       Date:  2017-10

Review 9.  Circulating Tumor Cell and Cell-free Circulating Tumor DNA in Lung Cancer.

Authors:  Fariz Nurwidya; Jamal Zaini; Andika Chandra Putra; Sita Andarini; Achmad Hudoyo; Elisna Syahruddin; Faisal Yunus
Journal:  Chonnam Med J       Date:  2016-09-23

10.  Distinct biological subtypes and patterns of genome evolution in lymphoma revealed by circulating tumor DNA.

Authors:  Florian Scherer; David M Kurtz; Aaron M Newman; Henning Stehr; Alexander F M Craig; Mohammad Shahrokh Esfahani; Alexander F Lovejoy; Jacob J Chabon; Daniel M Klass; Chih Long Liu; Li Zhou; Cynthia Glover; Brendan C Visser; George A Poultsides; Ranjana H Advani; Lauren S Maeda; Neel K Gupta; Ronald Levy; Robert S Ohgami; Christian A Kunder; Maximilian Diehn; Ash A Alizadeh
Journal:  Sci Transl Med       Date:  2016-11-09       Impact factor: 17.956

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