Literature DB >> 25749217

PANGEA-HIV: phylogenetics for generalised epidemics in Africa.

Deenan Pillay1, Joshua Herbeck2, Myron S Cohen3, Tulio de Oliveira4, Christophe Fraser5, Oliver Ratmann5, Andrew Leigh Brown6, Paul Kellam7.   

Abstract

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Year:  2015        PMID： 25749217      PMCID： PMC4968650          DOI： 10.1016/S1473-3099(15)70036-8

Source DB:  PubMed          Journal:  Lancet Infect Dis        ISSN： 1473-3099            Impact factor:   25.071


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  16 in total

1.  HIV transmission patterns among The Netherlands, Suriname, and The Netherlands Antilles: a molecular epidemiological study.

Authors:  Merlijn A Kramer; Marion Cornelissen; Dimitrios Paraskevis; Maria Prins; Roel A Coutinho; Ard I van Sighem; Lesley Sabajo; Ashley J Duits; Cai N Winkel; Jan M Prins; Marchina E van der Ende; Robert H Kauffmann; Eline L Op de Coul
Journal:  AIDS Res Hum Retroviruses       Date:  2010-10-07       Impact factor: 2.205

2.  Genetic analysis reveals the complex structure of HIV-1 transmission within defined risk groups.

Authors:  Stéphane Hué; Deenan Pillay; Jonathan P Clewley; Oliver G Pybus
Journal:  Proc Natl Acad Sci U S A       Date:  2005-03-14       Impact factor: 11.205

Review 3.  Concentrated HIV subepidemics in generalized epidemic settings.

Authors:  Frank Tanser; Tulio de Oliveira; Mathieu Maheu-Giroux; Till Bärnighausen
Journal:  Curr Opin HIV AIDS       Date:  2014-03       Impact factor: 4.283

Review 4.  Molecular tools for studying HIV transmission in sexual networks.

Authors:  Mary K Grabowski; Andrew D Redd
Journal:  Curr Opin HIV AIDS       Date:  2014-03       Impact factor: 4.283

5.  Determinants of HIV-1 transmission in men who have sex with men: a combined clinical, epidemiological and phylogenetic approach.

Authors:  Martin Fisher; David Pao; Alison E Brown; Darshan Sudarshi; O Noel Gill; Patricia Cane; Andrew J Buckton; John V Parry; Anne M Johnson; Caroline Sabin; Deenan Pillay
Journal:  AIDS       Date:  2010-07-17       Impact factor: 4.177

6.  Direct evidence of extensive diversity of HIV-1 in Kinshasa by 1960.

Authors:  Michael Worobey; Marlea Gemmel; Dirk E Teuwen; Tamara Haselkorn; Kevin Kunstman; Michael Bunce; Jean-Jacques Muyembe; Jean-Marie M Kabongo; Raphaël M Kalengayi; Eric Van Marck; M Thomas P Gilbert; Steven M Wolinsky
Journal:  Nature       Date:  2008-10-02       Impact factor: 49.962

7.  Dramatic increase in HIV prevalence after scale-up of antiretroviral treatment.

Authors:  Jaffer Zaidi; Erofili Grapsa; Frank Tanser; Marie-Louise Newell; Till Bärnighausen
Journal:  AIDS       Date:  2013-09-10       Impact factor: 4.177

8.  Maximising the effect of combination HIV prevention through prioritisation of the people and places in greatest need: a modelling study.

Authors:  Sarah-Jane Anderson; Peter Cherutich; Nduku Kilonzo; Ide Cremin; Daniela Fecht; Davies Kimanga; Malayah Harper; Ruth Laibon Masha; Prince Bahati Ngongo; William Maina; Mark Dybul; Timothy B Hallett
Journal:  Lancet       Date:  2014-07-19       Impact factor: 79.321

9.  Viral linkage in HIV-1 seroconverters and their partners in an HIV-1 prevention clinical trial.

Authors:  Mary S Campbell; James I Mullins; James P Hughes; Connie Celum; Kim G Wong; Dana N Raugi; Stefanie Sorensen; Julia N Stoddard; Hong Zhao; Wenjie Deng; Erin Kahle; Dana Panteleeff; Jared M Baeten; Francine E McCutchan; Jan Albert; Thomas Leitner; Anna Wald; Lawrence Corey; Jairam R Lingappa
Journal:  PLoS One       Date:  2011-03-02       Impact factor: 3.240

10.  Recent HIV-1 infection contributes to the viral diffusion over the French territory with a recent increasing frequency.

Authors:  Pierre Frange; Laurence Meyer; Christiane Deveau; Laurent Tran; Cecile Goujard; Jade Ghosn; Pierre-Marie Girard; Philippe Morlat; Christine Rouzioux; Marie-Laure Chaix
Journal:  PLoS One       Date:  2012-02-14       Impact factor: 3.240
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  28 in total

1.  The International Dimension of the U.S. HIV Transmission Network and Onward Transmission of HIV Recently Imported into the United States.

Authors:  Joel O Wertheim; Alexandra M Oster; Angela L Hernandez; Neeraja Saduvala; M Cheryl Bañez Ocfemia; H Irene Hall
Journal:  AIDS Res Hum Retroviruses       Date:  2016-05-19       Impact factor: 2.205

Review 2.  Microbial genome-wide association studies: lessons from human GWAS.

Authors:  Robert A Power; Julian Parkhill; Tulio de Oliveira
Journal:  Nat Rev Genet       Date:  2016-11-14       Impact factor: 53.242

Review 3.  Primate immunodeficiency virus classification and nomenclature: Review.

Authors:  Brian T Foley; Thomas Leitner; Dimitrios Paraskevis; Martine Peeters
Journal:  Infect Genet Evol       Date:  2016-10-24       Impact factor: 3.342

4.  Mapping of HIV-1C Transmission Networks Reveals Extensive Spread of Viral Lineages Across Villages in Botswana Treatment-as-Prevention Trial.

Authors:  Vlad Novitsky; Melissa Zahralban-Steele; Sikhulile Moyo; Tapiwa Nkhisang; Dorcas Maruapula; Mary Fran McLane; Jean Leidner; Kara Bennett; Kathleen E Wirth; Tendani Gaolathe; Etienne Kadima; Unoda Chakalisa; Molly Pretorius Holme; Shahin Lockman; Mompati Mmalane; Joseph Makhema; Simani Gaseitsiwe; Victor DeGruttola; M Essex
Journal:  J Infect Dis       Date:  2020-06-03       Impact factor: 5.226

Review 5.  The Role of Phylogenetics as a Tool to Predict the Spread of Resistance.

Authors:  Anna Zhukova; Teresa Cutino-Moguel; Olivier Gascuel; Deenan Pillay
Journal:  J Infect Dis       Date:  2017-12-01       Impact factor: 5.226

6.  Deep-sequence phylogenetics to quantify patterns of HIV transmission in the context of a universal testing and treatment trial - BCPP/Ya Tsie trial.

Authors:  Lerato E Magosi; Yinfeng Zhang; Tanya Golubchik; Victor DeGruttola; Eric Tchetgen Tchetgen; Vladimir Novitsky; Janet Moore; Pam Bachanas; Tebogo Segolodi; Refeletswe Lebelonyane; Molly Pretorius Holme; Sikhulile Moyo; Joseph Makhema; Shahin Lockman; Christophe Fraser; Myron Max Essex; Marc Lipsitch
Journal:  Elife       Date:  2022-03-01       Impact factor: 8.140

7.  Community and Provider Perspectives on Molecular HIV Surveillance and Cluster Detection and Response for HIV Prevention: Qualitative Findings From King County, Washington.

Authors:  Alic G Shook; Susan E Buskin; Matthew Golden; Julia C Dombrowski; Joshua Herbeck; Richard J Lechtenberg; Roxanne Kerani
Journal:  J Assoc Nurses AIDS Care       Date:  2021-10-26       Impact factor: 1.809

8.  Revisiting the recombinant history of HIV-1 group M with dynamic network community detection.

Authors:  Abayomi S Olabode; Garway T Ng; Kaitlyn E Wade; Mikhail Salnikov; Heather E Grant; David W Dick; Art F Y Poon
Journal:  Proc Natl Acad Sci U S A       Date:  2022-05-02       Impact factor: 12.779

Review 9.  PANGEA-HIV 2: Phylogenetics And Networks for Generalised Epidemics in Africa.

Authors:  Lucie Abeler-Dörner; Mary K Grabowski; Andrew Rambaut; Deenan Pillay; Christophe Fraser
Journal:  Curr Opin HIV AIDS       Date:  2019-05       Impact factor: 4.283

Review 10.  Ethical considerations in global HIV phylogenetic research.

Authors:  Cordelia E M Coltart; Anne Hoppe; Michael Parker; Liza Dawson; Joseph J Amon; Musonda Simwinga; Gail Geller; Gail Henderson; Oliver Laeyendecker; Joseph D Tucker; Patrick Eba; Vladimir Novitsky; Anne-Mieke Vandamme; Janet Seeley; Gina Dallabetta; Guy Harling; M Kate Grabowski; Peter Godfrey-Faussett; Christophe Fraser; Myron S Cohen; Deenan Pillay
Journal:  Lancet HIV       Date:  2018-08-30       Impact factor: 12.767
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