Literature DB >> 29029155

The Role of Phylogenetics as a Tool to Predict the Spread of Resistance.

Anna Zhukova1, Teresa Cutino-Moguel2, Olivier Gascuel1, Deenan Pillay3,4.   

Abstract

Drug resistance mutations emerge in genetic sequences of HIV through drug-selective pressure. Drug resistance can be transmitted. In this review we discuss phylogenetic methods used to study the emergence of drug resistance and the spread of resistant viruses.
© The Author 2017. Published by Oxford University Press for the Infectious Diseases Society of America. All rights reserved. For permissions, e-mail: journals.permissions@oup.com.

Keywords:  HIV; drug resistance; phylogenetics

Mesh：

Substances：

Year:  2017        PMID： 29029155      PMCID： PMC5853882          DOI： 10.1093/infdis/jix411

Source DB:  PubMed          Journal:  J Infect Dis        ISSN： 0022-1899            Impact factor:   5.226


  29 in total

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Authors:  Joseph Felsenstein
Journal:  Evolution       Date:  1985-07       Impact factor: 3.694

2.  Multidrug-Resistant HIV-1 Infection despite Preexposure Prophylaxis.

Authors:  David C Knox; Peter L Anderson; P Richard Harrigan; Darrell H S Tan
Journal:  N Engl J Med       Date:  2017-02-02       Impact factor: 91.245

3.  Determinants of HIV-1 transmission in men who have sex with men: a combined clinical, epidemiological and phylogenetic approach.

Authors:  Martin Fisher; David Pao; Alison E Brown; Darshan Sudarshi; O Noel Gill; Patricia Cane; Andrew J Buckton; John V Parry; Anne M Johnson; Caroline Sabin; Deenan Pillay
Journal:  AIDS       Date:  2010-07-17       Impact factor: 4.177

4.  Emergence of Acquired HIV-1 Drug Resistance Almost Stopped in Switzerland: A 15-Year Prospective Cohort Analysis.

Authors:  Alexandra U Scherrer; Viktor von Wyl; Wan-Lin Yang; Roger D Kouyos; Jürg Böni; Sabine Yerly; Thomas Klimkait; Vincent Aubert; Matthias Cavassini; Manuel Battegay; Hansjakob Furrer; Alexandra Calmy; Pietro Vernazza; Enos Bernasconi; Huldrych F Günthard; V Aubert; M Battegay; E Bernasconi; J Böni; D L Braun; H C Bucher; C Burton-Jeangros; A Calmy; M Cavassini; G Dollenmaier; M Egger; L Elzi; J Fehr; J Fellay; H Furrer; C A Fux; M Gorgievski; H Günthard; D Haerry; B Hasse; H H Hirsch; M Hoffmann; I Hösli; C Kahlert; L Kaiser; O Keiser; T Klimkait; R Kouyos; H Kovari; B Ledergerber; G Martinetti; B Martinez de Tejada; C Marzolini; K Metzner; N Müller; D Nadal; D Nicca; G Pantaleo; A Rauch; S Regenass; C Rudin; F Schöni-Affolter; P Schmid; R Speck; M Stöckle; P Tarr; A Trkola; P Vernazza; R Weber; S Yerly
Journal:  Clin Infect Dis       Date:  2016-03-08       Impact factor: 9.079

5.  Demonstration of sustained drug-resistant human immunodeficiency virus type 1 lineages circulating among treatment-naïve individuals.

Authors:  Stéphane Hué; Robert J Gifford; David Dunn; Esther Fernhill; Deenan Pillay
Journal:  J Virol       Date:  2009-01-21       Impact factor: 5.103

6.  A phylotype-based analysis highlights the role of drug-naive HIV-positive individuals in the transmission of antiretroviral resistance in the UK.

Authors:  Raphaël Mourad; François Chevennet; David T Dunn; Esther Fearnhill; Valerie Delpech; David Asboe; Olivier Gascuel; Stéphane Hue
Journal:  AIDS       Date:  2015-09-24       Impact factor: 4.177

7.  PANGEA-HIV: phylogenetics for generalised epidemics in Africa.

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Journal:  Lancet Infect Dis       Date:  2015-03       Impact factor: 25.071

Review 8.  Unifying the epidemiological and evolutionary dynamics of pathogens.

Authors:  Bryan T Grenfell; Oliver G Pybus; Julia R Gog; James L N Wood; Janet M Daly; Jenny A Mumford; Edward C Holmes
Journal:  Science       Date:  2004-01-16       Impact factor: 47.728

9.  Searching for virus phylotypes.

Authors:  François Chevenet; Matthieu Jung; Martine Peeters; Tulio de Oliveira; Olivier Gascuel
Journal:  Bioinformatics       Date:  2013-01-17       Impact factor: 6.937

10.  Pre-exposure prophylaxis to prevent the acquisition of HIV-1 infection (PROUD): effectiveness results from the pilot phase of a pragmatic open-label randomised trial.

Authors:  Sheena McCormack; David T Dunn; Monica Desai; David I Dolling; Mitzy Gafos; Richard Gilson; Ann K Sullivan; Amanda Clarke; Iain Reeves; Gabriel Schembri; Nicola Mackie; Christine Bowman; Charles J Lacey; Vanessa Apea; Michael Brady; Julie Fox; Stephen Taylor; Simone Antonucci; Saye H Khoo; James Rooney; Anthony Nardone; Martin Fisher; Alan McOwan; Andrew N Phillips; Anne M Johnson; Brian Gazzard; Owen N Gill
Journal:  Lancet       Date:  2015-09-09       Impact factor: 79.321
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  4 in total

1.  Early Presence of HIV-1 Subtype C in Washington, D.C.

Authors:  Zehava Grossman; Sheryl-Vi Rico; Katherine Cone; Wei Shao; Catherine Rehm; Sara Jones; Giorgio Bozzi; Sophie Dean; Robin Dewar; Tauseef Rehman; Julia Purdy; Colleen Hadigan; Alice K Pau; Frank Maldarelli
Journal:  AIDS Res Hum Retroviruses       Date:  2018-08       Impact factor: 2.205

2.  Incorporating alignment uncertainty into Felsenstein's phylogenetic bootstrap to improve its reliability.

Authors:  Jia-Ming Chang; Evan W Floden; Javier Herrero; Olivier Gascuel; Paolo Di Tommaso; Cedric Notredame
Journal:  Bioinformatics       Date:  2019-02-06       Impact factor: 6.937

3.  A Fast Likelihood Method to Reconstruct and Visualize Ancestral Scenarios.

Authors:  Sohta A Ishikawa; Anna Zhukova; Wataru Iwasaki; Olivier Gascuel
Journal:  Mol Biol Evol       Date:  2019-09-01       Impact factor: 16.240

4.  HIV Drug Resistance and Transmission Networks Among a Justice-Involved Population at the Time of Community Reentry in Washington, D.C.

Authors:  Curt G Beckwith; Sugi Min; Akarsh Manne; Vladimir Novitsky; Mark Howison; Tao Liu; Irene Kuo; Ann Kurth; Lauri Bazerman; Anya Agopian; Rami Kantor
Journal:  AIDS Res Hum Retroviruses       Date:  2021-05-24       Impact factor: 1.723
  4 in total

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