Literature DB >> 27789390

Primate immunodeficiency virus classification and nomenclature: Review.

Brian T Foley1, Thomas Leitner2, Dimitrios Paraskevis3, Martine Peeters4.   

Abstract

The International Committee for the Taxonomy and Nomenclature of Viruses does not rule on virus classifications below the species level. The definition of species for viruses cannot be clearly defined for all types of viruses. The complex and interesting epidemiology of Human Immunodeficiency Viruses demands a detailed and informative nomenclature system, while at the same time it presents challenges such that many of the rules need to be flexibly applied or modified over time. This review outlines the nomenclature system for primate lentiviruses and provides an update on new findings since the last review was written in 2000. Published by Elsevier B.V.

Entities:  

Keywords:  Classification; HIV; Immunodeficiency; Lentivirus; Nomenclature

Mesh:

Year:  2016        PMID: 27789390      PMCID: PMC5136504          DOI: 10.1016/j.meegid.2016.10.018

Source DB:  PubMed          Journal:  Infect Genet Evol        ISSN: 1567-1348            Impact factor:   3.342


  79 in total

1.  HIV-1 nomenclature proposal.

Authors:  D L Robertson; J P Anderson; J A Bradac; J K Carr; B Foley; R K Funkhouser; F Gao; B H Hahn; M L Kalish; C Kuiken; G H Learn; T Leitner; F McCutchan; S Osmanov; M Peeters; D Pieniazek; M Salminen; P M Sharp; S Wolinsky; B Korber
Journal:  Science       Date:  2000-04-07       Impact factor: 47.728

2.  Genetic variants of HIV-1 in Thailand.

Authors:  F E McCutchan; P A Hegerich; T P Brennan; P Phanuphak; P Singharaj; A Jugsudee; P W Berman; A M Gray; A K Fowler; D S Burke
Journal:  AIDS Res Hum Retroviruses       Date:  1992-11       Impact factor: 2.205

3.  Identification and molecular characterization of subsubtype A4 in central Africa.

Authors:  N Vidal; C Mulanga; S Edidi Bazepeo; F Lepira; E Delaporte; M Peeters
Journal:  AIDS Res Hum Retroviruses       Date:  2006-02       Impact factor: 2.205

4.  Complete nucleotide sequence of the AIDS virus, HTLV-III.

Authors:  L Ratner; W Haseltine; R Patarca; K J Livak; B Starcich; S F Josephs; E R Doran; J A Rafalski; E A Whitehorn; K Baumeister
Journal:  Nature       Date:  1985 Jan 24-30       Impact factor: 49.962

5.  The evolving molecular epidemiology of HIV-1 envelope subtypes in injecting drug users in Bangkok, Thailand: implications for HIV vaccine trials.

Authors:  M L Kalish; A Baldwin; S Raktham; C Wasi; C C Luo; G Schochetman; T D Mastro; N Young; S Vanichseni; H Rübsamen-Waigmann
Journal:  AIDS       Date:  1995-08       Impact factor: 4.177

6.  The serologic significance of F viral genotype for human immunodeficiency virus type 1 epidemic.

Authors:  C E Cernescu; G Tardei; A Necula; S M Ruta; C P Pau
Journal:  J Infect Dis       Date:  1994-10       Impact factor: 5.226

7.  Origin of the HIV-1 group O epidemic in western lowland gorillas.

Authors:  Mirela D'arc; Ahidjo Ayouba; Amandine Esteban; Gerald H Learn; Vanina Boué; Florian Liegeois; Lucie Etienne; Nikki Tagg; Fabian H Leendertz; Christophe Boesch; Nadège F Madinda; Martha M Robbins; Maryke Gray; Amandine Cournil; Marcel Ooms; Michael Letko; Viviana A Simon; Paul M Sharp; Beatrice H Hahn; Eric Delaporte; Eitel Mpoudi Ngole; Martine Peeters
Journal:  Proc Natl Acad Sci U S A       Date:  2015-03-02       Impact factor: 11.205

8.  Testing the hypothesis of a recombinant origin of human immunodeficiency virus type 1 subtype E.

Authors:  J P Anderson; A G Rodrigo; G H Learn; A Madan; C Delahunty; M Coon; M Girard; S Osmanov; L Hood; J I Mullins
Journal:  J Virol       Date:  2000-11       Impact factor: 5.103

9.  Identification of an env G subtype and heterogeneity of HIV-1 strains in the Russian Federation and Belarus.

Authors:  A Bobkov; R Cheingsong-Popov; M Garaev; A Rzhaninova; P Kaleebu; S Beddows; M H Bachmann; J I Mullins; J Louwagie; W Janssens
Journal:  AIDS       Date:  1994-12       Impact factor: 4.177

10.  PANGEA-HIV: phylogenetics for generalised epidemics in Africa.

Authors:  Deenan Pillay; Joshua Herbeck; Myron S Cohen; Tulio de Oliveira; Christophe Fraser; Oliver Ratmann; Andrew Leigh Brown; Paul Kellam
Journal:  Lancet Infect Dis       Date:  2015-03       Impact factor: 25.071

View more
  14 in total

1.  Geographically-stratified HIV-1 group M pol subtype and circulating recombinant form sequences.

Authors:  Soo-Yon Rhee; Robert W Shafer
Journal:  Sci Data       Date:  2018-07-31       Impact factor: 6.444

2.  Human Immunodeficiency Virus-1 Diversity in the Moscow Region, Russia: Phylodynamics of the Most Common Subtypes.

Authors:  Aleksey Lebedev; Natalya Lebedeva; Fedor Moskaleychik; Alexander Pronin; Elena Kazennova; Marina Bobkova
Journal:  Front Microbiol       Date:  2019-02-26       Impact factor: 5.640

3.  Prevalence of Non-B HIV-1 Subtypes in North Italy and Analysis of Transmission Clusters Based on Sequence Data Analysis.

Authors:  Giovanni Lorenzin; Franco Gargiulo; Arnaldo Caruso; Francesca Caccuri; Emanuele Focà; Anna Celotti; Eugenia Quiros-Roldan; Ilaria Izzo; Francesco Castelli; Maria A De Francesco
Journal:  Microorganisms       Date:  2019-12-23

4.  Genetic Characterization of a New HIV-1 Sub-Subtype A in Cabo Verde, Denominated A8.

Authors:  Rayana Katylin Mendes Da Silva; Isabel Inês Monteiro de Pina Araujo; Karine Venegas Maciera; Mariza Gonçalves Morgado; Monick Lindenmeyer Guimarães
Journal:  Viruses       Date:  2021-06-08       Impact factor: 5.048

5.  Unravelling the complicated evolutionary and dissemination history of HIV-1M subtype A lineages.

Authors:  Marcel Tongo; Gordon W Harkins; Jeffrey R Dorfman; Erik Billings; Sodsai Tovanabutra; Tulio de Oliveira; Darren P Martin
Journal:  Virus Evol       Date:  2018-02-19

6.  HIV-1 Sub-Subtype A6: Settings for Normalised Identification and Molecular Epidemiology in the Southern Federal District, Russia.

Authors:  Madita Schlösser; Vladimir V Kartashev; Visa H Mikkola; Andrey Shemshura; Sergey Saukhat; Dmitriy Kolpakov; Alexandr Suladze; Tatiana Tverdokhlebova; Katharina Hutt; Eva Heger; Elena Knops; Michael Böhm; Veronica Di Cristanziano; Rolf Kaiser; Anders Sönnerborg; Maurizio Zazzi; Marina Bobkova; Saleta Sierra
Journal:  Viruses       Date:  2020-04-22       Impact factor: 5.048

7.  Genetic Features of HIV-1 Integrase Sub-Subtype A6 Predominant in Russia and Predicted Susceptibility to INSTIs.

Authors:  Alina Kirichenko; Ilya Lapovok; Pavel Baryshev; David A M C van de Vijver; Jeroen J A van Kampen; Charles A B Boucher; Dimitrios Paraskevis; Dmitry Kireev
Journal:  Viruses       Date:  2020-07-31       Impact factor: 5.048

8.  A Nationwide Study about the Dispersal Patterns of the Predominant HIV-1 Subtypes A1 and B in Greece: Inference of the Molecular Transmission Clusters.

Authors:  Evangelia Georgia Kostaki; Maria Gova; Georgios Adamis; Georgios Xylomenos; Maria Chini; Nikos Mangafas; Marios Lazanas; Simeon Metallidis; Olga Tsachouridou; Vasileios Papastamopoulos; Dimitrios Chatzidimitriou; Eleni Kakalou; Anastasia Antoniadou; Antonios Papadopoulos; Mina Psichogiou; Dimitrios Basoulis; Dimitrios Pilalas; Ifigeneia Papageorgiou; Dimitra Paraskeva; Georgios Chrysos; Vasileios Paparizos; Sofia Kourkounti; Helen Sambatakou; Vasileios Bolanos; Nikolaos V Sipsas; Malvina Lada; Emmanouil Barbounakis; Evrikleia Kantzilaki; Periklis Panagopoulos; Vasilis Petrakis; Stelios Drimis; Charalambos Gogos; Angelos Hatzakis; Apostolos Beloukas; Lemonia Skoura; Dimitrios Paraskevis
Journal:  Viruses       Date:  2020-10-19       Impact factor: 5.048

9.  Genetic Diversity of HIV-1 in Krasnoyarsk Krai: Area with High Levels of HIV-1 Recombination in Russia.

Authors:  Lada V Maksimenko; Aleksey V Totmenin; Mariya P Gashnikova; Ekaterina M Astakhova; Sergey E Skudarnov; Tatyana S Ostapova; Svetlana V Yaschenko; Ivan O Meshkov; Evgeniy F Bocharov; Rinat А Maksyutov; Natalya M Gashnikova
Journal:  Biomed Res Int       Date:  2020-09-10       Impact factor: 3.411

10.  Genetic variability of the U5 and downstream sequence of major HIV-1 subtypes and circulating recombinant forms.

Authors:  Christelle Mbondji-Wonje; Ming Dong; Jiangqin Zhao; Xue Wang; Aubin Nanfack; Viswanath Ragupathy; Ana M Sanchez; Thomas N Denny; Indira Hewlett
Journal:  Sci Rep       Date:  2020-08-06       Impact factor: 4.996

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.