Literature DB >> 30174214

Ethical considerations in global HIV phylogenetic research.

Cordelia E M Coltart1, Anne Hoppe2, Michael Parker3, Liza Dawson4, Joseph J Amon5, Musonda Simwinga6, Gail Geller7, Gail Henderson8, Oliver Laeyendecker9, Joseph D Tucker10, Patrick Eba11, Vladimir Novitsky12, Anne-Mieke Vandamme13, Janet Seeley14, Gina Dallabetta15, Guy Harling16, M Kate Grabowski17, Peter Godfrey-Faussett18, Christophe Fraser19, Myron S Cohen20, Deenan Pillay21.   

Abstract

Phylogenetic analysis of pathogens is an increasingly powerful way to reduce the spread of epidemics, including HIV. As a result, phylogenetic approaches are becoming embedded in public health and research programmes, as well as outbreak responses, presenting unique ethical, legal, and social issues that are not adequately addressed by existing bioethics literature. We formed a multidisciplinary working group to explore the ethical issues arising from the design of, conduct in, and use of results from HIV phylogenetic studies, and to propose recommendations to minimise the associated risks to both individuals and groups. We identified eight key ethical domains, within which we highlighted factors that make HIV phylogenetic research unique. In this Review, we endeavoured to provide a framework to assist researchers, public health practitioners, and funding institutions to ensure that HIV phylogenetic studies are designed, done, and disseminated in an ethical manner. Our conclusions also have broader relevance for pathogen phylogenetics.
Copyright © 2018 Elsevier Ltd. All rights reserved.

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Year:  2018        PMID: 30174214      PMCID: PMC7327184          DOI: 10.1016/S2352-3018(18)30134-6

Source DB:  PubMed          Journal:  Lancet HIV        ISSN: 2352-3018            Impact factor:   12.767


  57 in total

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Authors:  Franziska Schoeni-Affolter; Bruno Ledergerber; Martin Rickenbach; Christoph Rudin; Huldrych F Günthard; Amalio Telenti; Hansjakob Furrer; Sabine Yerly; Patrick Francioli
Journal:  Int J Epidemiol       Date:  2009-11-30       Impact factor: 7.196

2.  Bootstrap confidence levels for phylogenetic trees.

Authors:  B Efron; E Halloran; S Holmes
Journal:  Proc Natl Acad Sci U S A       Date:  1996-07-09       Impact factor: 11.205

Review 3.  Conflicting messages: how criminal HIV disclosure laws undermine public health efforts to control the spread of HIV.

Authors:  Carol L Galletly; Steven D Pinkerton
Journal:  AIDS Behav       Date:  2006-09

4.  Molecular epidemiology of HIV transmission in a dental practice.

Authors:  C Y Ou; C A Ciesielski; G Myers; C I Bandea; C C Luo; B T Korber; J I Mullins; G Schochetman; R L Berkelman; A N Economou
Journal:  Science       Date:  1992-05-22       Impact factor: 47.728

5.  Establishing HIV treatment as prevention in the HIV Prevention Trials Network 052 randomized trial: an ethical odyssey.

Authors:  Myron S Cohen; Marybeth McCauley; Jeremy Sugarman
Journal:  Clin Trials       Date:  2012-06       Impact factor: 2.486

6.  Research priorities. ELSI 2.0 for genomics and society.

Authors:  Jane Kaye; Eric M Meslin; Bartha M Knoppers; Eric T Juengst; Mylène Deschênes; Anne Cambon-Thomsen; Donald Chalmers; Jantina De Vries; Kelly Edwards; Nils Hoppe; Alastair Kent; Clement Adebamowo; Patricia Marshall; Kazuto Kato
Journal:  Science       Date:  2012-05-11       Impact factor: 47.728

7.  The abandoned trials of pre-exposure prophylaxis for HIV: what went wrong?

Authors:  Jerome A Singh; Edward J Mills
Journal:  PLoS Med       Date:  2005-07-19       Impact factor: 11.069

8.  The route of HIV escape from immune response targeting multiple sites is determined by the cost-benefit tradeoff of escape mutations.

Authors:  Rebecca Batorsky; Rinat A Sergeev; Igor M Rouzine
Journal:  PLoS Comput Biol       Date:  2014-10-30       Impact factor: 4.475

9.  Social and Genetic Networks of HIV-1 Transmission in New York City.

Authors:  Joel O Wertheim; Sergei L Kosakovsky Pond; Lisa A Forgione; Sanjay R Mehta; Ben Murrell; Sharmila Shah; Davey M Smith; Konrad Scheffler; Lucia V Torian
Journal:  PLoS Pathog       Date:  2017-01-09       Impact factor: 6.823

10.  The ethics of sustainable genomic research in Africa.

Authors:  Michael Parker; Dominic P Kwiatkowski
Journal:  Genome Biol       Date:  2016-03-08       Impact factor: 13.583

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  13 in total

Review 1.  Using Social Networks to Understand and Overcome Implementation Barriers in the Global HIV Response.

Authors:  Guy Harling; Alexander C Tsai
Journal:  J Acquir Immune Defic Syndr       Date:  2019-12       Impact factor: 3.731

2.  Evaluation of Phylogenetic Methods for Inferring the Direction of Human Immunodeficiency Virus (HIV) Transmission: HIV Prevention Trials Network (HPTN) 052.

Authors:  Yinfeng Zhang; Chris Wymant; Oliver Laeyendecker; M Kathryn Grabowski; Matthew Hall; Sarah Hudelson; Estelle Piwowar-Manning; Marybeth McCauley; Theresa Gamble; Mina C Hosseinipour; Nagalingeswaran Kumarasamy; James G Hakim; Johnstone Kumwenda; Lisa A Mills; Breno R Santos; Beatriz Grinsztejn; Jose H Pilotto; Suwat Chariyalertsak; Joseph Makhema; Ying Q Chen; Myron S Cohen; Christophe Fraser; Susan H Eshleman
Journal:  Clin Infect Dis       Date:  2021-01-23       Impact factor: 9.079

Review 3.  Ethical issues in HIV phylogenetics and molecular epidemiology.

Authors:  Sanjay R Mehta; Cynthia Schairer; Susan Little
Journal:  Curr Opin HIV AIDS       Date:  2019-05       Impact factor: 4.283

Review 4.  The potential of genomics for infectious disease forecasting.

Authors:  Jessica E Stockdale; Pengyu Liu; Caroline Colijn
Journal:  Nat Microbiol       Date:  2022-10-20       Impact factor: 30.964

5.  Informed consent for HIV phylogenetic research: A case study of urban individuals living with HIV approached for enrollment in an HIV study.

Authors:  Abby E Rudolph; Omar Martinez; Robin Davison; Chineye Brenda Amuchi
Journal:  EHQUIDAD       Date:  2020 Jul-Dec

6.  Trust and Expectations of Researchers and Public Health Departments for the Use of HIV Molecular Epidemiology.

Authors:  Cynthia E Schairer; Sanjay R Mehta; Staal A Vinterbo; Martin Hoenigl; Michael Kalichman; Susan J Little
Journal:  AJOB Empir Bioeth       Date:  2019-05-03

Review 7.  PANGEA-HIV 2: Phylogenetics And Networks for Generalised Epidemics in Africa.

Authors:  Lucie Abeler-Dörner; Mary K Grabowski; Andrew Rambaut; Deenan Pillay; Christophe Fraser
Journal:  Curr Opin HIV AIDS       Date:  2019-05       Impact factor: 4.283

8.  National and International Dimensions of Human Immunodeficiency Virus-1 Sequence Clusters in a Northern California Clinical Cohort.

Authors:  Soo-Yon Rhee; Brittany R Magalis; Leo Hurley; Michael J Silverberg; Julia L Marcus; Sally Slome; Sergei L Kosakovsky Pond; Robert W Shafer
Journal:  Open Forum Infect Dis       Date:  2019-03-14       Impact factor: 3.835

Review 9.  From the micro to the macro to improve health: microorganism ecology and society in teaching infectious disease epidemiology.

Authors:  Maryam Shahmanesh; Guy Harling; Cordelia E M Coltart; Heather Bailey; Carina King; Jo Gibbs; Janet Seeley; Andrew Phillips; Caroline A Sabin; Robert W Aldridge; Pam Sonnenberg; Graham Hart; Mike Rowson; Deenan Pillay; Anne M Johnson; Ibrahim Abubakar; Nigel Field
Journal:  Lancet Infect Dis       Date:  2020-05-07       Impact factor: 25.071

10.  A Comprehensive Genomics Solution for HIV Surveillance and Clinical Monitoring in Low-Income Settings.

Authors:  David Bonsall; Tanya Golubchik; Mariateresa de Cesare; Mohammed Limbada; Barry Kosloff; George MacIntyre-Cockett; Matthew Hall; Chris Wymant; M Azim Ansari; Lucie Abeler-Dörner; Ab Schaap; Anthony Brown; Eleanor Barnes; Estelle Piwowar-Manning; Susan Eshleman; Ethan Wilson; Lynda Emel; Richard Hayes; Sarah Fidler; Helen Ayles; Rory Bowden; Christophe Fraser
Journal:  J Clin Microbiol       Date:  2020-09-22       Impact factor: 5.948

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