Literature DB >> 25661246

Evolution and diversification of the basal transcription machinery.

Sascha H C Duttke1.   

Abstract

Transcription initiation was once thought to be regulated primarily by sequence-specific transcription factors with the basal transcription machinery being largely invariant. Gradually it became apparent that the basal transcription machinery greatly diversified during evolution and new studies now demonstrate that diversification of the TATA-binding protein (TBP) family yielded specialized and largely independent transcription systems.
Copyright © 2015 Elsevier Ltd. All rights reserved.

Entities:  

Keywords:  TATA-binding protein (TBP); TBP-related factor (TRF); basal transcription machinery; diversification; evolution; gene regulation; system factors; transcription

Mesh：

Substances：

Year:  2015        PMID： 25661246      PMCID： PMC4410091          DOI： 10.1016/j.tibs.2015.01.005

Source DB:  PubMed          Journal:  Trends Biochem Sci        ISSN： 0968-0004            Impact factor:   13.807


  10 in total

Review 1.  The RNA polymerase II core promoter.

Authors:  Stephen T Smale; James T Kadonaga
Journal:  Annu Rev Biochem       Date:  2003-03-19       Impact factor: 23.643

Review 2.  Evolution of multisubunit RNA polymerases in the three domains of life.

Authors:  Finn Werner; Dina Grohmann
Journal:  Nat Rev Microbiol       Date:  2011-02       Impact factor: 60.633

Review 3.  Conservation between the RNA polymerase I, II, and III transcription initiation machineries.

Authors:  Alessandro Vannini; Patrick Cramer
Journal:  Mol Cell       Date:  2012-02-24       Impact factor: 17.970

Review 4.  Unexpected roles for core promoter recognition factors in cell-type-specific transcription and gene regulation.

Authors:  James A Goodrich; Robert Tjian
Journal:  Nat Rev Genet       Date:  2010-07-13       Impact factor: 53.242

5.  RNA polymerase III accurately initiates transcription from RNA polymerase II promoters in vitro.

Authors:  Sascha H C Duttke
Journal:  J Biol Chem       Date:  2014-06-10       Impact factor: 5.157

6.  Complete genome sequence of the model actinomycete Streptomyces coelicolor A3(2).

Authors:  S D Bentley; K F Chater; A-M Cerdeño-Tárraga; G L Challis; N R Thomson; K D James; D E Harris; M A Quail; H Kieser; D Harper; A Bateman; S Brown; G Chandra; C W Chen; M Collins; A Cronin; A Fraser; A Goble; J Hidalgo; T Hornsby; S Howarth; C-H Huang; T Kieser; L Larke; L Murphy; K Oliver; S O'Neil; E Rabbinowitsch; M-A Rajandream; K Rutherford; S Rutter; K Seeger; D Saunders; S Sharp; R Squares; S Squares; K Taylor; T Warren; A Wietzorrek; J Woodward; B G Barrell; J Parkhill; D A Hopwood
Journal:  Nature       Date:  2002-05-09       Impact factor: 49.962

7.  Differential utilization of TATA box-binding protein (TBP) and TBP-related factor 1 (TRF1) at different classes of RNA polymerase III promoters.

Authors:  Neha Verma; Ko-Hsuan Hung; Jin Joo Kang; Nermeen H Barakat; William E Stumph
Journal:  J Biol Chem       Date:  2013-08-16       Impact factor: 5.157

8.  TRF2 and the evolution of the bilateria.

Authors:  Sascha H C Duttke; Russell F Doolittle; Yuan-Liang Wang; James T Kadonaga
Journal:  Genes Dev       Date:  2014-10-01       Impact factor: 11.361

9.  TRF2, but not TBP, mediates the transcription of ribosomal protein genes.

Authors:  Yuan-Liang Wang; Sascha H C Duttke; Kai Chen; Jeff Johnston; George A Kassavetis; Julia Zeitlinger; James T Kadonaga
Journal:  Genes Dev       Date:  2014-06-23       Impact factor: 11.361

10.  Drosophila TRF2 is a preferential core promoter regulator.

Authors:  Adi Kedmi; Yonathan Zehavi; Yair Glick; Yaron Orenstein; Diana Ideses; Chaim Wachtel; Tirza Doniger; Hiba Waldman Ben-Asher; Nemone Muster; James Thompson; Scott Anderson; Dorit Avrahami; John R Yates; Ron Shamir; Doron Gerber; Tamar Juven-Gershon
Journal:  Genes Dev       Date:  2014-09-15       Impact factor: 11.361
  10 in total
  5 in total

1.  Nascent RNA sequencing reveals distinct features in plant transcription.

Authors:  Jonathan Hetzel; Sascha H Duttke; Christopher Benner; Joanne Chory
Journal:  Proc Natl Acad Sci U S A       Date:  2016-10-11       Impact factor: 11.205

Review 2.  The punctilious RNA polymerase II core promoter.

Authors:  Long Vo Ngoc; Yuan-Liang Wang; George A Kassavetis; James T Kadonaga
Journal:  Genes Dev       Date:  2017-07-01       Impact factor: 11.361

3.  Same same but different: The evolution of TBP in archaea and their eukaryotic offspring.

Authors:  Fabian Blombach; Dina Grohmann
Journal:  Transcription       Date:  2017-02-08

4.  Control of human gene expression: High abundance of divergent transcription in genes containing both INR and BRE elements in the core promoter.

Authors:  Jay C Brown
Journal:  PLoS One       Date:  2018-08-23       Impact factor: 3.240

5.  The SAGA complex regulates early steps in transcription via its deubiquitylase module subunit USP22.

Authors:  Timothy J Stanek; Victoria J Gennaro; Mason A Tracewell; Daniela Di Marcantonio; Kristen L Pauley; Sabrina Butt; Christopher McNair; Feng Wang; Andrew V Kossenkov; Karen E Knudsen; Tauseef Butt; Stephen M Sykes; Steven B McMahon
Journal:  EMBO J       Date:  2021-06-22       Impact factor: 14.012
  5 in total

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