Literature DB >> 21233849

Evolution of multisubunit RNA polymerases in the three domains of life.

Finn Werner1, Dina Grohmann.   

Abstract

RNA polymerases (RNAPs) carry out transcription in all living organisms. All multisubunit RNAPs are derived from a common ancestor, a fact that becomes apparent from their amino acid sequence, subunit composition, structure, function and molecular mechanisms. Despite the similarity of these complexes, the organisms that depend on them are extremely diverse, ranging from microorganisms to humans. Recent findings about the molecular and functional architecture of RNAPs has given us intriguing insights into their evolution and how their activities are harnessed by homologous and analogous basal factors during the transcription cycle. We provide an overview of the evolutionary conservation of and differences between the multisubunit polymerases in the three domains of life, and introduce the 'elongation first' hypothesis for the evolution of transcriptional regulation.

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Year:  2011        PMID: 21233849     DOI: 10.1038/nrmicro2507

Source DB:  PubMed          Journal:  Nat Rev Microbiol        ISSN: 1740-1526            Impact factor:   60.633


  120 in total

1.  Crystal structure of Thermus aquaticus core RNA polymerase at 3.3 A resolution.

Authors:  G Zhang; E A Campbell; L Minakhin; C Richter; K Severinov; S A Darst
Journal:  Cell       Date:  1999-09-17       Impact factor: 41.582

Review 2.  Bacterial RNA polymerases: the wholo story.

Authors:  Katsuhiko S Murakami; Seth A Darst
Journal:  Curr Opin Struct Biol       Date:  2003-02       Impact factor: 6.809

Review 3.  Multiple sigma subunits and the partitioning of bacterial transcription space.

Authors:  Tanja M Gruber; Carol A Gross
Journal:  Annu Rev Microbiol       Date:  2003       Impact factor: 15.500

4.  Transcript cleavage factors GreA and GreB act as transient catalytic components of RNA polymerase.

Authors:  Oleg Laptenko; Jookyung Lee; Ivan Lomakin; Sergei Borukhov
Journal:  EMBO J       Date:  2003-12-01       Impact factor: 11.598

5.  The sigma 70 subunit of RNA polymerase mediates a promoter-proximal pause at the lac promoter.

Authors:  Bryce E Nickels; Jayanta Mukhopadhyay; Sean J Garrity; Richard H Ebright; Ann Hochschild
Journal:  Nat Struct Mol Biol       Date:  2004-05-02       Impact factor: 15.369

6.  RNA polymerase I contains a TFIIF-related DNA-binding subcomplex.

Authors:  Sebastian R Geiger; Kristina Lorenzen; Amelie Schreieck; Patrizia Hanecker; Dirk Kostrewa; Albert J R Heck; Patrick Cramer
Journal:  Mol Cell       Date:  2010-08-27       Impact factor: 17.970

7.  Archaeal RNA polymerase subunits F and P are bona fide homologs of eukaryotic RPB4 and RPB12.

Authors:  F Werner; J J Eloranta; R O Weinzierl
Journal:  Nucleic Acids Res       Date:  2000-11-01       Impact factor: 16.971

8.  The Rpb4 subunit of RNA polymerase II contributes to cotranscriptional recruitment of 3' processing factors.

Authors:  Vanessa M Runner; Vladimir Podolny; Stephen Buratowski
Journal:  Mol Cell Biol       Date:  2008-01-14       Impact factor: 4.272

Review 9.  RNA-Seq: a revolutionary tool for transcriptomics.

Authors:  Zhong Wang; Mark Gerstein; Michael Snyder
Journal:  Nat Rev Genet       Date:  2009-01       Impact factor: 53.242

10.  The archaeal RNA polymerase subunit P and the eukaryotic polymerase subunit Rpb12 are interchangeable in vivo and in vitro.

Authors:  Christoph Reich; Mirijam Zeller; Philipp Milkereit; Winfried Hausner; Patrick Cramer; Herbert Tschochner; Michael Thomm
Journal:  Mol Microbiol       Date:  2008-12-18       Impact factor: 3.501

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  177 in total

1.  A high density of cis-information terminates RNA Polymerase III on a 2-rail track.

Authors:  Aneeshkumar G Arimbasseri; Richard J Maraia
Journal:  RNA Biol       Date:  2015-12-04       Impact factor: 4.652

Review 2.  Bacterial Transcription as a Target for Antibacterial Drug Development.

Authors:  Cong Ma; Xiao Yang; Peter J Lewis
Journal:  Microbiol Mol Biol Rev       Date:  2016-01-13       Impact factor: 11.056

3.  Manipulating archaeal systems to permit analyses of transcription elongation-termination decisions in vitro.

Authors:  Alexandra M Gehring; Thomas J Santangelo
Journal:  Methods Mol Biol       Date:  2015

Review 4.  Evolution and diversification of the basal transcription machinery.

Authors:  Sascha H C Duttke
Journal:  Trends Biochem Sci       Date:  2015-02-05       Impact factor: 13.807

5.  X-ray crystal structure of Escherichia coli RNA polymerase σ70 holoenzyme.

Authors:  Katsuhiko S Murakami
Journal:  J Biol Chem       Date:  2013-02-06       Impact factor: 5.157

Review 6.  Transcription termination by the eukaryotic RNA polymerase III.

Authors:  Aneeshkumar G Arimbasseri; Keshab Rijal; Richard J Maraia
Journal:  Biochim Biophys Acta       Date:  2012-10-23

Review 7.  Sub1/PC4, a multifaceted factor: from transcription to genome stability.

Authors:  Miguel Garavís; Olga Calvo
Journal:  Curr Genet       Date:  2017-05-31       Impact factor: 3.886

Review 8.  Diverse and unified mechanisms of transcription initiation in bacteria.

Authors:  James Chen; Hande Boyaci; Elizabeth A Campbell
Journal:  Nat Rev Microbiol       Date:  2020-10-29       Impact factor: 60.633

9.  Structural biology: Snapshots of transcription initiation.

Authors:  Steven Hahn; Stephen Buratowski
Journal:  Nature       Date:  2016-05-11       Impact factor: 49.962

Review 10.  Nuclear organization and genome function.

Authors:  Kevin Van Bortle; Victor G Corces
Journal:  Annu Rev Cell Dev Biol       Date:  2012-08-17       Impact factor: 13.827

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