Literature DB >> 20628347

Unexpected roles for core promoter recognition factors in cell-type-specific transcription and gene regulation.

James A Goodrich1, Robert Tjian.   

Abstract

The eukaryotic core promoter recognition complex was generally thought to play an essential but passive role in the regulation of gene expression. However, recent evidence now indicates that core promoter recognition complexes together with 'non-prototypical' subunits may have a vital regulatory function in driving cell-specific programmes of transcription during development. Furthermore, new roles for components of these complexes have been identified beyond development; for example, in mediating interactions with chromatin and in maintaining active gene expression across cell divisions.

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Year:  2010        PMID: 20628347      PMCID: PMC2965628          DOI: 10.1038/nrg2847

Source DB:  PubMed          Journal:  Nat Rev Genet        ISSN: 1471-0056            Impact factor:   53.242


  68 in total

1.  The intracellular localisation of TAF7L, a paralogue of transcription factor TFIID subunit TAF7, is developmentally regulated during male germ-cell differentiation.

Authors:  Jean-Christophe Pointud; Gabrielle Mengus; Stefano Brancorsini; Lucia Monaco; Martti Parvinen; Paolo Sassone-Corsi; Irwin Davidson
Journal:  J Cell Sci       Date:  2003-05-01       Impact factor: 5.285

2.  TRF2 associates with DREF and directs promoter-selective gene expression in Drosophila.

Authors:  Andreas Hochheimer; Sharleen Zhou; Shuang Zheng; Michael C Holmes; Robert Tjian
Journal:  Nature       Date:  2002-11-28       Impact factor: 49.962

3.  TAF10 (TAF(II)30) is necessary for TFIID stability and early embryogenesis in mice.

Authors:  William S Mohan; Elisabeth Scheer; Olivia Wendling; Daniel Metzger; Làszlò Tora
Journal:  Mol Cell Biol       Date:  2003-06       Impact factor: 4.272

4.  TRF3, a TATA-box-binding protein-related factor, is vertebrate-specific and widely expressed.

Authors:  Stephan P Persengiev; Xiaochun Zhu; Bharat L Dixit; Glenn A Maston; Ellen L W Kittler; Michael R Green
Journal:  Proc Natl Acad Sci U S A       Date:  2003-11-21       Impact factor: 11.205

5.  dTrf2 is required for transcriptional and developmental responses to ecdysone during Drosophila metamorphosis.

Authors:  Arash Bashirullah; Geanette Lam; Viravuth P Yin; Carl S Thummel
Journal:  Dev Dyn       Date:  2007-11       Impact factor: 3.780

6.  Transcription of histone gene cluster by differential core-promoter factors.

Authors:  Yoh Isogai; Sündüz Keles; Matthias Prestel; Andreas Hochheimer; Robert Tjian
Journal:  Genes Dev       Date:  2007-10-31       Impact factor: 11.361

7.  TBP2, a vertebrate-specific member of the TBP family, is required in embryonic development of zebrafish.

Authors:  Richárd Bártfai; Carolin Balduf; Traci Hilton; Yvonne Rathmann; Yavor Hadzhiev; László Tora; László Orbán; Ferenc Müller
Journal:  Curr Biol       Date:  2004-04-06       Impact factor: 10.834

8.  The TBN protein, which is essential for early embryonic mouse development, is an inducible TAFII implicated in adipogenesis.

Authors:  Mohamed Guermah; Kai Ge; Cheng Ming Chiang; Robert G Roeder
Journal:  Mol Cell       Date:  2003-10       Impact factor: 17.970

9.  Structural changes in TAF4b-TFIID correlate with promoter selectivity.

Authors:  Wei-Li Liu; Robert A Coleman; Patricia Grob; David S King; Laurence Florens; Michael P Washburn; Kenneth G Geles; Joyce L Yang; Vincent Ramey; Eva Nogales; Robert Tjian
Journal:  Mol Cell       Date:  2008-01-18       Impact factor: 17.970

10.  Initiation of zebrafish haematopoiesis by the TATA-box-binding protein-related factor Trf3.

Authors:  Daniel O Hart; Tamal Raha; Nathan D Lawson; Michael R Green
Journal:  Nature       Date:  2007-11-28       Impact factor: 49.962

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  115 in total

1.  Proteome-wide detection of Abl1 SH3-binding peptides by integrating computational prediction and peptide microarray.

Authors:  Zheng Xu; Tingjun Hou; Nan Li; Yang Xu; Wei Wang
Journal:  Mol Cell Proteomics       Date:  2011-10-24       Impact factor: 5.911

2.  TAF4b is required for mouse spermatogonial stem cell development.

Authors:  Lindsay A Lovasco; Eric A Gustafson; Kimberly A Seymour; Dirk G de Rooij; Richard N Freiman
Journal:  Stem Cells       Date:  2015-04       Impact factor: 6.277

3.  TAF10 Interacts with the GATA1 Transcription Factor and Controls Mouse Erythropoiesis.

Authors:  Petros Papadopoulos; Laura Gutiérrez; Jeroen Demmers; Elisabeth Scheer; Farzin Pourfarzad; Dimitris N Papageorgiou; Elena Karkoulia; John Strouboulis; Harmen J G van de Werken; Reinier van der Linden; Peter Vandenberghe; Dick H W Dekkers; Sjaak Philipsen; Frank Grosveld; Làszlò Tora
Journal:  Mol Cell Biol       Date:  2015-04-13       Impact factor: 4.272

4.  Characterization of novel peroxisome proliferator-activated receptor γ coactivator-1α (PGC-1α) isoform in human liver.

Authors:  Thomas K Felder; Selma M Soyal; Hannes Oberkofler; Penelope Hahne; Simon Auer; Richard Weiss; Gabriele Gadermaier; Karl Miller; Franz Krempler; Harald Esterbauer; Wolfgang Patsch
Journal:  J Biol Chem       Date:  2011-10-18       Impact factor: 5.157

Review 5.  Evolution and diversification of the basal transcription machinery.

Authors:  Sascha H C Duttke
Journal:  Trends Biochem Sci       Date:  2015-02-05       Impact factor: 13.807

6.  A TAF4 coactivator function for E proteins that involves enhanced TFIID binding.

Authors:  Wei-Yi Chen; Jinsong Zhang; Huimin Geng; Zhimei Du; Tomoyoshi Nakadai; Robert G Roeder
Journal:  Genes Dev       Date:  2013-07-15       Impact factor: 11.361

Review 7.  The intertwined roles of transcription and repair proteins.

Authors:  Yick W Fong; Claudia Cattoglio; Robert Tjian
Journal:  Mol Cell       Date:  2013-11-07       Impact factor: 17.970

8.  Processing the complexities of transcription.

Authors:  Richard N Freiman
Journal:  Dev Cell       Date:  2013-10-28       Impact factor: 12.270

Review 9.  Transcriptional regulation and its misregulation in disease.

Authors:  Tong Ihn Lee; Richard A Young
Journal:  Cell       Date:  2013-03-14       Impact factor: 41.582

10.  Holo-TFIID controls the magnitude of a transcription burst and fine-tuning of transcription.

Authors:  Katie L Pennington; Sharon K Marr; Gung-Wei Chirn; Michael T Marr
Journal:  Proc Natl Acad Sci U S A       Date:  2013-04-22       Impact factor: 11.205

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