Literature DB >> 25640429

Construction, imaging, and analysis of FRET-based tension sensors in living cells.

Andrew S LaCroix1, Katheryn E Rothenberg1, Matthew E Berginski1, Aarti N Urs1, Brenton D Hoffman1.   

Abstract

Due to an increased appreciation for the importance of mechanical stimuli in many biological contexts, an interest in measuring the forces experienced by specific proteins in living cells has recently emerged. The development and use of Förster resonance energy transfer (FRET)-based molecular tension sensors has enabled these types of studies and led to important insights into the mechanisms those cells utilize to probe and respond to the mechanical nature of their surrounding environment. The process for creating and utilizing FRET-based tension sensors can be divided into three main parts: construction, imaging, and analysis. First we review several methods for the construction of genetically encoded FRET-based tension sensors, including restriction enzyme-based methods as well as the more recently developed overlap extension or Gibson Assembly protocols. Next, we discuss the intricacies associated with imaging tension sensors, including optimizing imaging parameters as well as common techniques for estimating artifacts within standard imaging systems. Then, we detail the analysis of such data and describe how to extract useful information from a FRET experiment. Finally, we provide a discussion on identifying and correcting common artifacts in the imaging of FRET-based tension sensors.
Copyright © 2015 Elsevier Inc. All rights reserved.

Entities:  

Keywords:  Biosensor; Forster resonance energy transfer (FRET); Image analysis; Mechanotransduction; Subcellular force measurement; Tension sensor

Mesh:

Substances:

Year:  2015        PMID: 25640429      PMCID: PMC4511473          DOI: 10.1016/bs.mcb.2014.10.033

Source DB:  PubMed          Journal:  Methods Cell Biol        ISSN: 0091-679X            Impact factor:   1.441


  29 in total

1.  Cells lying on a bed of microneedles: an approach to isolate mechanical force.

Authors:  John L Tan; Joe Tien; Dana M Pirone; Darren S Gray; Kiran Bhadriraju; Christopher S Chen
Journal:  Proc Natl Acad Sci U S A       Date:  2003-01-27       Impact factor: 11.205

2.  The phasor approach to fluorescence lifetime imaging analysis.

Authors:  Michelle A Digman; Valeria R Caiolfa; Moreno Zamai; Enrico Gratton
Journal:  Biophys J       Date:  2007-11-02       Impact factor: 4.033

3.  Efficient subpixel image registration algorithms.

Authors:  Manuel Guizar-Sicairos; Samuel T Thurman; James R Fienup
Journal:  Opt Lett       Date:  2008-01-15       Impact factor: 3.776

4.  Generation and analysis of biosensors to measure mechanical forces within cells.

Authors:  Katharina Austen; Carleen Kluger; Andrea Freikamp; Anna Chrostek-Grashoff; Carsten Grashoff
Journal:  Methods Mol Biol       Date:  2013

Review 5.  The detection and role of molecular tension in focal adhesion dynamics.

Authors:  Brenton D Hoffman
Journal:  Prog Mol Biol Transl Sci       Date:  2014       Impact factor: 3.622

6.  Overlap extension PCR cloning: a simple and reliable way to create recombinant plasmids.

Authors:  Anton V Bryksin; Ichiro Matsumura
Journal:  Biotechniques       Date:  2010-06       Impact factor: 1.993

7.  A fluorescence energy transfer-based mechanical stress sensor for specific proteins in situ.

Authors:  Fanjie Meng; Thomas M Suchyna; Frederick Sachs
Journal:  FEBS J       Date:  2008-05-10       Impact factor: 5.542

8.  Quantitative ratiometric imaging of FRET-biosensors in living cells.

Authors:  Désirée Spiering; Jose Javier Bravo-Cordero; Yasmin Moshfegh; Veronika Miskolci; Louis Hodgson
Journal:  Methods Cell Biol       Date:  2013       Impact factor: 1.441

9.  Stretching single talin rod molecules activates vinculin binding.

Authors:  Armando del Rio; Raul Perez-Jimenez; Ruchuan Liu; Pere Roca-Cusachs; Julio M Fernandez; Michael P Sheetz
Journal:  Science       Date:  2009-01-30       Impact factor: 63.714

10.  Measuring mechanical tension across vinculin reveals regulation of focal adhesion dynamics.

Authors:  Carsten Grashoff; Brenton D Hoffman; Michael D Brenner; Ruobo Zhou; Maddy Parsons; Michael T Yang; Mark A McLean; Stephen G Sligar; Christopher S Chen; Taekjip Ha; Martin A Schwartz
Journal:  Nature       Date:  2010-07-08       Impact factor: 49.962

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  14 in total

1.  Nesprin-2G, a Component of the Nuclear LINC Complex, Is Subject to Myosin-Dependent Tension.

Authors:  Paul T Arsenovic; Iswarya Ramachandran; Kranthidhar Bathula; Ruijun Zhu; Jiten D Narang; Natalie A Noll; Christopher A Lemmon; Gregg G Gundersen; Daniel E Conway
Journal:  Biophys J       Date:  2016-01-05       Impact factor: 4.033

2.  Tau-based fluorescent protein fusions to visualize microtubules.

Authors:  Paul Mooney; Taylor Sulerud; James F Pelletier; Matthew R Dilsaver; Miroslav Tomschik; Christoph Geisler; Jesse C Gatlin
Journal:  Cytoskeleton (Hoboken)       Date:  2017-05-22

Review 3.  Lighting Up the Force: Investigating Mechanisms of Mechanotransduction Using Fluorescent Tension Probes.

Authors:  Carol Jurchenko; Khalid S Salaita
Journal:  Mol Cell Biol       Date:  2015-06-01       Impact factor: 4.272

4.  A Protocol for Using Förster Resonance Energy Transfer (FRET)-force Biosensors to Measure Mechanical Forces across the Nuclear LINC Complex.

Authors:  Paul T Arsenovic; Kranthidhar Bathula; Daniel E Conway
Journal:  J Vis Exp       Date:  2017-04-11       Impact factor: 1.355

5.  Tunable molecular tension sensors reveal extension-based control of vinculin loading.

Authors:  Andrew S LaCroix; Andrew D Lynch; Matthew E Berginski; Brenton D Hoffman
Journal:  Elife       Date:  2018-07-19       Impact factor: 8.140

Review 6.  Engineering approaches to study fibrosis in 3-D in vitro systems.

Authors:  Ana M Porras; Heather N Hutson; Anthony J Berger; Kristyn S Masters
Journal:  Curr Opin Biotechnol       Date:  2016-02-27       Impact factor: 9.740

7.  Extending the Capabilities of Molecular Force Sensors via DNA Nanotechnology.

Authors:  Susana M Beltrán; Marvin J Slepian; Rebecca E Taylor
Journal:  Crit Rev Biomed Eng       Date:  2020

8.  Improving Quality, Reproducibility, and Usability of FRET-Based Tension Sensors.

Authors:  Evan M Gates; Andrew S LaCroix; Katheryn E Rothenberg; Brenton D Hoffman
Journal:  Cytometry A       Date:  2018-12-06       Impact factor: 4.355

Review 9.  Molecular mechanisms of mechanotransduction in integrin-mediated cell-matrix adhesion.

Authors:  Zhenhai Li; Hyunjung Lee; Cheng Zhu
Journal:  Exp Cell Res       Date:  2016-10-06       Impact factor: 3.905

10.  Vinculin Force-Sensitive Dynamics at Focal Adhesions Enable Effective Directed Cell Migration.

Authors:  Katheryn E Rothenberg; David W Scott; Nicolas Christoforou; Brenton D Hoffman
Journal:  Biophys J       Date:  2018-04-10       Impact factor: 4.033

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