Literature DB >> 20569222

Overlap extension PCR cloning: a simple and reliable way to create recombinant plasmids.

Anton V Bryksin1, Ichiro Matsumura.   

Abstract

Here we describe a straightforward, efficient, and reliable way to clone an insert of choice into a plasmid of choice without restriction endonucleases or T4 DNA ligase. Chimeric primers containing plasmid sequence at the 5' ends and insert sequence at the 3' ends were used to PCR-amplify insertion sequences of various sizes, namely the genes for GFP (gfp), beta-d-glucuronidase (gusA), and beta-galactosidase (lacZ), as well as the entire luxABCDE operon. These inserts were employed as mega-primers in a second PCR with a circular plasmid template. The original plasmid templates were then destroyed in restriction digests with DpnI, and the overlap extension PCR products were used to transform competent Escherichia coli cells. Phusion DNA polymerase was used for the amplification and fusion reactions, so both reactions were easy to monitor and optimize.

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Year:  2010        PMID: 20569222      PMCID: PMC3121328          DOI: 10.2144/000113418

Source DB:  PubMed          Journal:  Biotechniques        ISSN: 0736-6205            Impact factor:   1.993


  12 in total

1.  GATEWAY recombinational cloning: application to the cloning of large numbers of open reading frames or ORFeomes.

Authors:  A J Walhout; G F Temple; M A Brasch; J L Hartley; M A Lorson; S van den Heuvel; M Vidal
Journal:  Methods Enzymol       Date:  2000       Impact factor: 1.600

2.  Construction of long DNA molecules using long PCR-based fusion of several fragments simultaneously.

Authors:  Nikolai A Shevchuk; Anton V Bryksin; Yevgeniya A Nusinovich; Felipe C Cabello; Margaret Sutherland; Stephan Ladisch
Journal:  Nucleic Acids Res       Date:  2004-01-22       Impact factor: 16.971

3.  A novel strategy to engineer DNA polymerases for enhanced processivity and improved performance in vitro.

Authors:  Yan Wang; Dennis E Prosen; Li Mei; John C Sullivan; Michael Finney; Peter B Vander Horn
Journal:  Nucleic Acids Res       Date:  2004-02-18       Impact factor: 16.971

4.  Construction of T-vectors, a rapid and general system for direct cloning of unmodified PCR products.

Authors:  D Marchuk; M Drumm; A Saulino; F S Collins
Journal:  Nucleic Acids Res       Date:  1991-03-11       Impact factor: 16.971

5.  Concerted assembly and cloning of multiple DNA segments using in vitro site-specific recombination: functional analysis of multi-segment expression clones.

Authors:  David L Cheo; Steven A Titus; Devon R N Byrd; James L Hartley; Gary F Temple; Michael A Brasch
Journal:  Genome Res       Date:  2004-10       Impact factor: 9.043

6.  Ligase-free subcloning: a versatile method to subclone polymerase chain reaction (PCR) products in a single day.

Authors:  A R Shuldiner; K Tanner; L A Scott; C A Moore; J Roth
Journal:  Anal Biochem       Date:  1991-04       Impact factor: 3.365

7.  PCR-induced (ligase-free) subcloning: a rapid reliable method to subclone polymerase chain reaction (PCR) products.

Authors:  A R Shuldiner; L A Scott; J Roth
Journal:  Nucleic Acids Res       Date:  1990-04-11       Impact factor: 16.971

Review 8.  Genetic engineering using homologous recombination.

Authors:  Donald L Court; James A Sawitzke; Lynn C Thomason
Journal:  Annu Rev Genet       Date:  2002-06-11       Impact factor: 16.830

9.  Advantages of Thermococcus kodakaraenis (KOD) DNA Polymerase for PCR-mass spectrometry based analyses.

Authors:  Linda M Benson; Allison P Null; David C Muddiman
Journal:  J Am Soc Mass Spectrom       Date:  2003-06       Impact factor: 3.109

10.  One-step DNA fragment assembly and circularization for gene cloning.

Authors:  Peijun Zuo; Bakr M Rabie
Journal:  Curr Issues Mol Biol       Date:  2009-06-03       Impact factor: 2.081

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  225 in total

1.  Simple cloning via direct transformation of PCR product (DNA Multimer) to Escherichia coli and Bacillus subtilis.

Authors:  Chun You; Xiao-Zhou Zhang; Y-H Percival Zhang
Journal:  Appl Environ Microbiol       Date:  2011-12-22       Impact factor: 4.792

2.  Rapid, efficient and precise allele replacement in the fission yeast Schizosaccharomyces pombe.

Authors:  Jun Gao; Fengling Kan; Jacy L Wagnon; Aaron J Storey; Reine U Protacio; Mari K Davidson; Wayne P Wahls
Journal:  Curr Genet       Date:  2013-09-12       Impact factor: 3.886

3.  The Second Messenger c-di-AMP Regulates Diverse Cellular Pathways Involved in Stress Response, Biofilm Formation, Cell Wall Homeostasis, SpeB Expression, and Virulence in Streptococcus pyogenes.

Authors:  Tazin Fahmi; Sabrina Faozia; Gary C Port; Kyu Hong Cho
Journal:  Infect Immun       Date:  2019-05-21       Impact factor: 3.441

4.  An alternative approach in Gateway(®) cloning when the bacterial antibiotic selection cassettes of the entry clone and destination vector are the same.

Authors:  Kamal Kumar; Saurabh Yadav; Savithri Purayannur; Praveen Kumar Verma
Journal:  Mol Biotechnol       Date:  2013-06       Impact factor: 2.695

5.  The msaABCR Operon Regulates the Response to Oxidative Stress in Staphylococcus aureus.

Authors:  Shanti Pandey; Gyan S Sahukhal; Mohamed O Elasri
Journal:  J Bacteriol       Date:  2019-10-04       Impact factor: 3.490

6.  Structure of an Ancient Respiratory System.

Authors:  Hongjun Yu; Chang-Hao Wu; Gerrit J Schut; Dominik K Haja; Gongpu Zhao; John W Peters; Michael W W Adams; Huilin Li
Journal:  Cell       Date:  2018-05-10       Impact factor: 41.582

7.  Engineered Regulatory Systems Modulate Gene Expression of Human Commensals in the Gut.

Authors:  Bentley Lim; Michael Zimmermann; Natasha A Barry; Andrew L Goodman
Journal:  Cell       Date:  2017-04-20       Impact factor: 41.582

Review 8.  Unsung renal receptors: orphan G-protein-coupled receptors play essential roles in renal development and homeostasis.

Authors:  P Rajkumar; J L Pluznick
Journal:  Acta Physiol (Oxf)       Date:  2016-10-23       Impact factor: 6.311

9.  The inhibitory effect of secretory leukocyte protease inhibitor (SLPI) on formation of neutrophil extracellular traps.

Authors:  Katarzyna Zabieglo; Pawel Majewski; Monika Majchrzak-Gorecka; Agnieszka Wlodarczyk; Beata Grygier; Aneta Zegar; Monika Kapinska-Mrowiecka; Antonina Naskalska; Krzysztof Pyrc; Adam Dubin; Sharon M Wahl; Joanna Cichy
Journal:  J Leukoc Biol       Date:  2015-04-27       Impact factor: 4.962

10.  An Improved Strategy for Fluorescent Tagging of Membrane Proteins for Overexpression and Purification in Mammalian Cells.

Authors:  Mitra S Rana; Xiyu Wang; Anirban Banerjee
Journal:  Biochemistry       Date:  2018-11-27       Impact factor: 3.162

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