Literature DB >> 30523675

Improving Quality, Reproducibility, and Usability of FRET-Based Tension Sensors.

Evan M Gates1, Andrew S LaCroix1, Katheryn E Rothenberg1, Brenton D Hoffman1.   

Abstract

Mechanobiology, the study of how mechanical forces affect cellular behavior, is an emerging field of study that has garnered broad and significant interest. Researchers are currently seeking to better understand how mechanical signals are transmitted, detected, and integrated at a subcellular level. One tool for addressing these questions is a Förster resonance energy transfer (FRET)-based tension sensor, which enables the measurement of molecular-scale forces across proteins based on changes in emitted light. However, the reliability and reproducibility of measurements made with these sensors has not been thoroughly examined. To address these concerns, we developed numerical methods that improve the accuracy of measurements made using sensitized emission-based imaging. To establish that FRET-based tension sensors are versatile tools that provide consistent measurements, we used these methods, and demonstrated that a vinculin tension sensor is unperturbed by cell fixation, permeabilization, and immunolabeling. This suggests FRET-based tension sensors could be coupled with a variety of immuno-fluorescent labeling techniques. Additionally, as tension sensors are frequently employed in complex biological samples where large experimental repeats may be challenging, we examined how sample size affects the uncertainty of FRET measurements. In total, this work establishes guidelines to improve FRET-based tension sensor measurements, validate novel implementations of these sensors, and ensure that results are precise and reproducible.
© 2018 International Society for Advancement of Cytometry. © 2018 International Society for Advancement of Cytometry.

Entities:  

Keywords:  FRET efficiency; FRET-based biosensor; mechanotransduction; sensitized emission

Mesh:

Substances:

Year:  2018        PMID: 30523675      PMCID: PMC6375766          DOI: 10.1002/cyto.a.23688

Source DB:  PubMed          Journal:  Cytometry A        ISSN: 1552-4922            Impact factor:   4.355


  69 in total

1.  Biosensors for characterizing the dynamics of rho family GTPases in living cells.

Authors:  Louis Hodgson; Feimo Shen; Klaus Hahn
Journal:  Curr Protoc Cell Biol       Date:  2010-03

2.  Mechanical feedback through E-cadherin promotes direction sensing during collective cell migration.

Authors:  Danfeng Cai; Shann-Ching Chen; Mohit Prasad; Li He; Xiaobo Wang; Valerie Choesmel-Cadamuro; Jessica K Sawyer; Gaudenz Danuser; Denise J Montell
Journal:  Cell       Date:  2014-05-22       Impact factor: 41.582

3.  Real Time FRET Based Detection of Mechanical Stress in Cytoskeletal and Extracellular Matrix Proteins.

Authors:  Fanjie Meng; Thomas M Suchyna; Elena Lazakovitch; Richard M Gronostajski; Frederick Sachs
Journal:  Cell Mol Bioeng       Date:  2011-06       Impact factor: 2.321

Review 4.  Converging and Unique Mechanisms of Mechanotransduction at Adhesion Sites.

Authors:  Mitchell K L Han; Johan de Rooij
Journal:  Trends Cell Biol       Date:  2016-03-29       Impact factor: 20.808

5.  Comparison of fixation protocols for adherent cultured cells applied to a GFP fusion protein of the epidermal growth factor receptor.

Authors:  R Brock; I H Hamelers; T M Jovin
Journal:  Cytometry       Date:  1999-04-01

6.  Vinculin potentiates E-cadherin mechanosensing and is recruited to actin-anchored sites within adherens junctions in a myosin II-dependent manner.

Authors:  Quint le Duc; Quanming Shi; Iris Blonk; Arnoud Sonnenberg; Ning Wang; Deborah Leckband; Johan de Rooij
Journal:  J Cell Biol       Date:  2010-06-28       Impact factor: 10.539

7.  Estimating the distance separating fluorescent protein FRET pairs.

Authors:  Steven S Vogel; B Wieb van der Meer; Paul S Blank
Journal:  Methods       Date:  2013-06-25       Impact factor: 3.608

8.  Coordination between Intra- and Extracellular Forces Regulates Focal Adhesion Dynamics.

Authors:  Bibhu Ranjan Sarangi; Mukund Gupta; Bryant L Doss; Nicolas Tissot; France Lam; René-Marc Mège; Nicolas Borghi; Benoît Ladoux
Journal:  Nano Lett       Date:  2016-12-23       Impact factor: 11.189

9.  Measuring mechanical tension across vinculin reveals regulation of focal adhesion dynamics.

Authors:  Carsten Grashoff; Brenton D Hoffman; Michael D Brenner; Ruobo Zhou; Maddy Parsons; Michael T Yang; Mark A McLean; Stephen G Sligar; Christopher S Chen; Taekjip Ha; Martin A Schwartz
Journal:  Nature       Date:  2010-07-08       Impact factor: 49.962

10.  Quantitative analysis of recombination between YFP and CFP genes of FRET biosensors introduced by lentiviral or retroviral gene transfer.

Authors:  Akira T Komatsubara; Michiyuki Matsuda; Kazuhiro Aoki
Journal:  Sci Rep       Date:  2015-08-20       Impact factor: 4.379

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  5 in total

Review 1.  Contractile force assessment methods for in vitro skeletal muscle tissues.

Authors:  Camila Vesga-Castro; Javier Aldazabal; Ainara Vallejo-Illarramendi; Jacobo Paredes
Journal:  Elife       Date:  2022-05-23       Impact factor: 8.713

2.  Förster resonance energy transfer efficiency of the vinculin tension sensor in cultured primary cortical neuronal growth cones.

Authors:  Marina A Ayad; Timothy Mahon; Mihir Patel; Marina M Cararo-Lopes; Ilker Hacihaliloglu; Bonnie L Firestein; Nada N Boustany
Journal:  Neurophotonics       Date:  2022-05-30       Impact factor: 4.212

3.  TRIP6 is required for tension at adherens junctions.

Authors:  Srividya Venkatramanan; Consuelo Ibar; Kenneth D Irvine
Journal:  J Cell Sci       Date:  2021-03-11       Impact factor: 5.285

4.  FRET efficiency measurement in a molecular tension probe with a low-cost frequency-domain fluorescence lifetime imaging microscope.

Authors:  John-Paul Dumas; James Y Jiang; Evan M Gates; Brenton D Hoffman; Mark C Pierce; Nada N Boustany
Journal:  J Biomed Opt       Date:  2019-12       Impact factor: 3.170

5.  Evaluation of Caspase-3 Activity During Apoptosis with Fluorescence Lifetime-Based Cytometry Measurements and Phasor Analyses.

Authors:  Kapil Nichani; Jianzhi Li; Miho Suzuki; Jessica P Houston
Journal:  Cytometry A       Date:  2020-08-25       Impact factor: 4.355

  5 in total

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