Literature DB >> 25637959

Computational models in the age of large datasets.

Timothy O'Leary1, Alexander C Sutton1, Eve Marder2.   

Abstract

Technological advances in experimental neuroscience are generating vast quantities of data, from the dynamics of single molecules to the structure and activity patterns of large networks of neurons. How do we make sense of these voluminous, complex, disparate and often incomplete data? How do we find general principles in the morass of detail? Computational models are invaluable and necessary in this task and yield insights that cannot otherwise be obtained. However, building and interpreting good computational models is a substantial challenge, especially so in the era of large datasets. Fitting detailed models to experimental data is difficult and often requires onerous assumptions, while more loosely constrained conceptual models that explore broad hypotheses and principles can yield more useful insights.
Copyright © 2015 Elsevier Ltd. All rights reserved.

Entities:  

Mesh:

Year:  2015        PMID: 25637959      PMCID: PMC4517826          DOI: 10.1016/j.conb.2015.01.006

Source DB:  PubMed          Journal:  Curr Opin Neurobiol        ISSN: 0959-4388            Impact factor:   6.627


  66 in total

1.  Animal-to-animal variability of connection strength in the leech heartbeat central pattern generator.

Authors:  Rebecca C Roffman; Brian J Norris; Ronald L Calabrese
Journal:  J Neurophysiol       Date:  2011-12-21       Impact factor: 2.714

2.  Mechanism of voltage gating in potassium channels.

Authors:  Morten Ø Jensen; Vishwanath Jogini; David W Borhani; Abba E Leffler; Ron O Dror; David E Shaw
Journal:  Science       Date:  2012-04-13       Impact factor: 47.728

3.  Correlations in ion channel expression emerge from homeostatic tuning rules.

Authors:  Timothy O'Leary; Alex H Williams; Jonathan S Caplan; Eve Marder
Journal:  Proc Natl Acad Sci U S A       Date:  2013-06-24       Impact factor: 11.205

Review 4.  Molecular computation in neurons: a modeling perspective.

Authors:  Upinder S Bhalla
Journal:  Curr Opin Neurobiol       Date:  2013-12-12       Impact factor: 6.627

5.  Discovery of brainwide neural-behavioral maps via multiscale unsupervised structure learning.

Authors:  Joshua T Vogelstein; Youngser Park; Tomoko Ohyama; Rex A Kerr; James W Truman; Carey E Priebe; Marta Zlatic
Journal:  Science       Date:  2014-03-27       Impact factor: 47.728

6.  Learning precisely timed spikes.

Authors:  Raoul-Martin Memmesheimer; Ran Rubin; Bence P Olveczky; Haim Sompolinsky
Journal:  Neuron       Date:  2014-04-24       Impact factor: 17.173

7.  Multiple mechanisms switch an electrically coupled, synaptically inhibited neuron between competing rhythmic oscillators.

Authors:  Gabrielle J Gutierrez; Timothy O'Leary; Eve Marder
Journal:  Neuron       Date:  2013-03-06       Impact factor: 17.173

8.  How multiple conductances determine electrophysiological properties in a multicompartment model.

Authors:  Adam L Taylor; Jean-Marc Goaillard; Eve Marder
Journal:  J Neurosci       Date:  2009-04-29       Impact factor: 6.167

9.  Decoding neural responses to temporal cues for sound localization.

Authors:  Dan F M Goodman; Victor Benichoux; Romain Brette
Journal:  Elife       Date:  2013-12-03       Impact factor: 8.140

10.  Random convergence of olfactory inputs in the Drosophila mushroom body.

Authors:  Sophie J C Caron; Vanessa Ruta; L F Abbott; Richard Axel
Journal:  Nature       Date:  2013-04-24       Impact factor: 49.962

View more
  21 in total

1.  Brian 2, an intuitive and efficient neural simulator.

Authors:  Romain Brette; Dan Fm Goodman; Marcel Stimberg
Journal:  Elife       Date:  2019-08-20       Impact factor: 8.140

2.  Maximizing the information learned from finite data selects a simple model.

Authors:  Henry H Mattingly; Mark K Transtrum; Michael C Abbott; Benjamin B Machta
Journal:  Proc Natl Acad Sci U S A       Date:  2018-02-06       Impact factor: 11.205

3.  Training deep neural density estimators to identify mechanistic models of neural dynamics.

Authors:  Pedro J Gonçalves; Jan-Matthis Lueckmann; Michael Deistler; Marcel Nonnenmacher; Kaan Öcal; Giacomo Bassetto; Chaitanya Chintaluri; William F Podlaski; Sara A Haddad; Tim P Vogels; David S Greenberg; Jakob H Macke
Journal:  Elife       Date:  2020-09-17       Impact factor: 8.140

4.  From Whole-Brain Data to Functional Circuit Models: The Zebrafish Optomotor Response.

Authors:  Eva A Naumann; James E Fitzgerald; Timothy W Dunn; Jason Rihel; Haim Sompolinsky; Florian Engert
Journal:  Cell       Date:  2016-11-03       Impact factor: 41.582

5.  Co-expression of calcium and hERG potassium channels reduces the incidence of proarrhythmic events.

Authors:  Sara Ballouz; Melissa M Mangala; Matthew D Perry; Stewart Heitmann; Jesse A Gillis; Adam P Hill; Jamie I Vandenberg
Journal:  Cardiovasc Res       Date:  2021-08-29       Impact factor: 10.787

6.  A Proposed Mechanism for Spontaneous Transitions between Interictal and Ictal Activity.

Authors:  Theju Jacob; Kyle P Lillis; Zemin Wang; Waldemar Swiercz; Negah Rahmati; Kevin J Staley
Journal:  J Neurosci       Date:  2018-11-16       Impact factor: 6.167

Review 7.  Genetic variants in Alzheimer disease - molecular and brain network approaches.

Authors:  Chris Gaiteri; Sara Mostafavi; Christopher J Honey; Philip L De Jager; David A Bennett
Journal:  Nat Rev Neurol       Date:  2016-06-10       Impact factor: 42.937

8.  Interrogating theoretical models of neural computation with emergent property inference.

Authors:  Sean R Bittner; Agostina Palmigiano; Alex T Piet; Chunyu A Duan; Carlos D Brody; Kenneth D Miller; John Cunningham
Journal:  Elife       Date:  2021-07-29       Impact factor: 8.140

Review 9.  Theoretical principles for illuminating sensorimotor processing with brain-wide neuronal recordings.

Authors:  Tirthabir Biswas; William E Bishop; James E Fitzgerald
Journal:  Curr Opin Neurobiol       Date:  2020-11-25       Impact factor: 6.627

10.  Automatic Construction of Predictive Neuron Models through Large Scale Assimilation of Electrophysiological Data.

Authors:  Alain Nogaret; C Daniel Meliza; Daniel Margoliash; Henry D I Abarbanel
Journal:  Sci Rep       Date:  2016-09-08       Impact factor: 4.379

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.